Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 0.0e+00 2149.4 1101 100.0
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 0.0e+00 1851.3 1105 87.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 0.0e+00 1795.4 1104 84.7
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 0.0e+00 1773.1 1104 83.7
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 0.0e+00 1679.8 1110 78.5
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1226.8 1130 59.9
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1081.2 1123 54.8
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1077.8 1126 53.8
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 7.5e-310 1067.4 1127 54.2
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 9.7e-310 1067.0 1112 55.5
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.7e-309 1066.2 1134 53.9
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 1.0e-306 1057.0 1121 53.6
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.9e-306 1055.4 1134 54.6
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.0e-302 1042.7 1200 50.6
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.2e-299 1033.5 1125 52.2
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.6e-299 1033.1 1118 53.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.5e-299 1031.6 1133 53.8
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.7e-298 1029.6 1115 52.4
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 2.2e-298 1029.2 1126 52.6
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 8.8e-295 1017.3 1118 52.3
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-294 1016.1 1118 52.3
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 2.0e-294 1016.1 1123 52.1
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 7.5e-294 1014.2 1122 51.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.8e-293 1011.5 1123 51.9
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 5.4e-292 1008.1 1131 52.9
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 7.0e-292 1007.7 1122 51.3
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 9.1e-292 1007.3 1110 52.1
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 7.7e-291 1004.2 1105 51.9
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 2.3e-290 1002.7 1107 51.3
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.9e-289 999.6 1126 51.8
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 2.5e-289 999.2 1146 50.7
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.6e-288 996.5 1112 52.2
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 3.6e-288 995.3 1112 52.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.0e-287 993.8 1114 51.6
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.5e-286 989.9 1114 51.3
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 1.2e-283 980.3 1113 51.2
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 3.5e-283 978.8 1134 50.4
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 2.9e-282 975.7 1107 51.5
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 8.6e-282 974.2 1125 50.9
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.1e-281 973.8 1112 50.6
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 4.3e-281 971.8 1108 51.1
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 5.6e-281 971.5 1112 51.3
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 9.5e-281 970.7 1101 51.2
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.8e-279 966.5 1107 50.9
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.2e-278 963.8 1107 49.9
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.3e-277 960.3 1117 50.0
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.7e-277 959.9 1095 51.8
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 7.0e-276 954.5 1138 49.6
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 3.9e-274 948.7 1115 49.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 9.5e-273 944.1 1125 50.0
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.5e-270 936.8 1002 53.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 4.9e-269 931.8 1047 51.3
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 8.3e-269 931.0 1138 49.5
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.0e-267 926.4 1190 47.6
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.0e-266 922.5 1006 52.6
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 3.9e-266 922.2 1105 49.1
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 8.6e-266 921.0 1124 49.1
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 5.6e-265 918.3 1101 48.9
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 5.6e-265 918.3 1117 48.1
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.6e-264 916.8 1116 49.2
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.8e-264 916.0 1113 49.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.8e-264 916.0 1107 49.5
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.2e-262 910.6 1106 49.0
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.0e-262 909.8 557 85.8
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 5.8e-262 908.3 1118 48.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 9.9e-262 907.5 1153 49.1
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 6.4e-261 904.8 994 51.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.2e-260 902.5 1107 47.5
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.2e-259 900.6 1125 47.4
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 4.3e-257 892.1 1131 47.8
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 4.7e-256 888.6 1146 47.4
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.8e-255 886.7 1116 47.9
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.6e-254 882.9 1128 47.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 8.4e-253 877.9 953 53.3
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 4.1e-252 875.5 1141 47.7
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 9.2e-252 874.4 965 52.2
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.5e-251 872.5 1115 46.2
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.6e-250 868.2 1108 45.8
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.5e-249 867.1 1105 46.3
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 9.6e-249 864.4 1118 45.8
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1120 45.6
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 4.7e-248 862.1 1116 46.6
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.7e-248 862.1 1102 47.0
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 6.2e-248 861.7 1107 46.1
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 8.1e-248 861.3 1106 45.7
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.8e-247 860.1 1140 46.1
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.6e-246 856.3 1095 47.9
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 6.4e-245 851.7 1104 45.7
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.9e-244 850.1 1108 45.1
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.4e-244 849.7 1105 45.5
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.4e-244 849.7 1105 45.5
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 4.2e-244 849.0 1105 46.3
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 7.1e-244 848.2 1106 45.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.6e-243 847.0 1112 45.8
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.7e-242 843.6 1110 45.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.5e-241 840.5 1103 44.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.5e-241 840.5 1103 44.4
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 5.6e-241 838.6 1107 44.8
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 5.6e-241 838.6 1106 44.8
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 6.2e-240 835.1 453 93.6
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.2e-238 830.9 1138 44.1
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 9.9e-238 827.8 1158 44.1
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.9e-236 823.5 1054 45.9
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.1e-233 814.3 1117 44.4
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.0e-231 805.8 886 53.5
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 9.0e-231 804.7 773 60.2
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.0e-227 792.0 683 64.1
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 3.7e-224 782.7 1126 44.0
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 4.0e-223 779.2 733 60.6
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.8e-216 756.5 1126 42.7
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.9e-213 746.5 1125 42.8
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 5.0e-213 745.7 784 56.6
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.9e-212 743.8 668 62.0
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.9e-207 725.3 683 58.3
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.9e-205 719.9 875 50.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.0e-205 719.2 685 58.1
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 2.0e-193 680.6 851 48.4
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.7e-192 677.6 857 46.7
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 7.0e-191 672.2 505 68.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 3.5e-190 669.8 890 47.3
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 3.6e-179 633.3 654 55.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.1e-171 607.4 1109 37.8
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 7.5e-169 599.0 645 54.1
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 7.0e-167 592.4 886 41.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 1.2e-158 565.1 956 40.9
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.6e-155 554.7 921 41.8
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.2e-126 458.8 694 41.6
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.7e-125 454.9 268 86.6
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.7e-125 454.9 268 86.6
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.1e-124 452.2 807 39.4
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.6e-123 448.4 713 41.0
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.8e-109 401.7 615 41.5
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.3e-109 401.4 615 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 5.7e-100 370.2 328 56.4
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-95 355.5 455 47.5
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.1e-86 323.6 206 78.6
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.7e-64 252.3 226 56.6
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.8e-56 224.6 681 30.4
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 6.1e-54 217.2 632 31.5
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.4e-53 216.1 790 28.5
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.8e-51 208.4 142 75.4
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 9.8e-44 183.3 168 62.5
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.4e-42 178.7 121 80.2
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 6.6e-40 170.6 132 64.4
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 3.3e-39 168.3 159 64.2
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.1e-30 139.0 91 73.6
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 9.9e-28 130.2 174 39.1
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 9.6e-23 113.6 379 29.8
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 1.8e-21 109.4 67 77.6
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.0e-12 79.3 130 35.4
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 4.6e-09 68.2 285 28.8
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 6.0e-09 67.8 205 30.7
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 3.0e-08 65.5 133 33.1
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 3.0e-08 65.5 111 33.3
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 3.3e-07 62.0 111 33.3
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 9.6e-07 60.5 69 49.3
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.6e-06 58.5 148 30.4


User provided reference genes

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