Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 3.9e-149 531.6 293 100.0
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 4.7e-118 428.3 284 77.5
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.8e-114 416.4 284 83.1
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.2e-112 409.5 294 77.9
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 3.8e-112 408.7 284 83.8
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 6.7e-109 397.9 284 71.8
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.5e-103 380.2 274 78.8
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 4.5e-97 358.6 294 62.2
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.3e-96 357.1 294 62.2
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 3.0e-93 345.9 293 59.7
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.2e-92 344.0 293 58.7
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 4.4e-92 342.0 294 58.8
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 7.5e-92 341.3 284 60.6
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.7e-91 340.1 294 58.2
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 2.8e-91 339.3 284 59.2
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 8.3e-91 337.8 294 59.9
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 8.3e-91 337.8 294 59.5
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.1e-90 337.4 300 57.7
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 3.1e-90 335.9 294 56.8
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 4.1e-90 335.5 294 59.9
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 7.0e-90 334.7 294 57.8
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 9.2e-90 334.3 272 62.1
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.2e-89 334.0 294 58.8
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 2.7e-89 332.8 294 58.5
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 3.5e-89 332.4 294 58.2
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 5.9e-89 331.6 284 58.1
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 3.9e-88 328.9 284 58.8
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 3.9e-88 328.9 294 57.1
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 8.6e-88 327.8 284 57.4
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.1e-87 327.4 284 57.0
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 4.3e-87 325.5 294 57.1
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.6e-87 325.1 294 57.1
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 7.3e-87 324.7 294 57.8
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 7.3e-87 324.7 293 56.3
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 9.5e-87 324.3 294 57.8
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 9.5e-87 324.3 298 57.4
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 9.5e-87 324.3 296 58.1
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.1e-86 323.2 285 59.3
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 2.8e-86 322.8 284 57.7
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 3.6e-86 322.4 294 54.4
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 4.7e-86 322.0 294 57.1
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 6.1e-86 321.6 294 56.8
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 8.0e-86 321.2 294 56.1
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 1.0e-85 320.9 294 56.8
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.3e-85 319.7 294 58.2
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 2.3e-85 319.7 294 56.8
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 3.1e-85 319.3 294 55.4
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 5.2e-85 318.5 284 56.7
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 5.2e-85 318.5 284 56.7
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 5.2e-85 318.5 294 55.1
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 6.8e-85 318.2 294 55.4
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 6.8e-85 318.2 294 57.5
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 8.9e-85 317.8 294 55.1
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 8.9e-85 317.8 297 54.9
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 1.2e-84 317.4 294 56.1
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.6e-84 316.2 295 56.6
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 2.6e-84 316.2 284 56.7
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 3.4e-84 315.8 284 57.4
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.7e-83 313.5 282 56.4
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.7e-83 313.5 273 57.1
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 2.2e-83 313.2 284 56.3
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 2.9e-83 312.8 284 56.3
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 2.9e-83 312.8 283 56.2
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 2.9e-83 312.8 283 56.2
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 2.9e-83 312.8 272 57.7
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 3.7e-83 312.4 294 54.4
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 3.7e-83 312.4 294 54.4
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 4.9e-83 312.0 294 53.7
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 6.4e-83 311.6 284 56.0
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 6.4e-83 311.6 284 56.0
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.9e-82 310.1 296 57.1
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 2.4e-82 309.7 294 54.1
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 2.4e-82 309.7 284 56.0
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 2.4e-82 309.7 284 56.0
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 2.4e-82 309.7 284 56.0
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 2.4e-82 309.7 276 56.9
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 2.4e-82 309.7 294 55.1
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 3.2e-82 309.3 284 55.6
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 3.2e-82 309.3 284 54.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 4.1e-82 308.9 294 53.1
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 7.0e-82 308.1 294 52.4
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 2.7e-81 306.2 270 57.4
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 3.5e-81 305.8 295 56.9
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.0e-80 304.3 294 52.7
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.3e-80 303.9 282 57.1
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.3e-80 303.1 294 54.1
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 3.0e-80 302.8 284 54.6
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 6.6e-80 301.6 284 54.9
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 5.6e-79 298.5 261 56.3
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 7.3e-79 298.1 284 54.2
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 2.8e-78 296.2 290 54.1
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.1e-77 294.3 271 55.4
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 6.8e-77 291.6 316 49.7
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 2.0e-76 290.0 282 53.9
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.9e-75 285.4 270 54.1
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 6.4e-75 285.0 272 52.2
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 4.1e-74 282.3 283 52.7
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 9.2e-74 281.2 289 52.6
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.6e-73 280.4 270 53.7
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 1.0e-72 277.7 296 50.0
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 2.3e-72 276.6 272 52.6
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 3.9e-72 275.8 286 51.7
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 3.3e-71 272.7 248 57.7
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 4.3e-71 272.3 428 40.0
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 8.9e-69 264.6 250 54.4
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.3e-67 260.8 290 46.9
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.8e-62 243.0 226 57.5
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.8e-62 243.0 237 52.3
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 6.9e-53 211.8 205 54.6
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 4.9e-51 205.7 285 41.8
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.4e-50 203.4 267 39.3
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 4.2e-50 202.6 286 40.2
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 6.0e-49 198.7 268 39.2
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 2.5e-47 193.4 299 36.5
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.2e-44 184.5 292 37.0
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.5e-44 184.1 268 38.8
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 2.2e-43 180.3 286 38.5
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 2.1e-41 173.7 180 52.2
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.0e-40 171.4 206 43.2
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 6.7e-40 168.7 262 37.0
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 3.7e-38 162.9 248 37.9
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.1e-37 161.4 191 46.6
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 2.0e-36 157.1 111 65.8
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 2.6e-36 156.8 92 75.0
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 4.6e-33 146.0 264 33.0
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 2.3e-32 143.7 300 34.3
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 7.4e-31 138.7 158 48.1
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 2.8e-22 110.2 299 25.4
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 1.5e-20 104.4 145 41.4
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.4e-20 103.2 80 61.2
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 8.5e-19 98.6 79 59.5
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 2.5e-18 97.1 299 34.8
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 7.2e-18 95.5 75 61.3
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 1.8e-08 64.3 71 50.7
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 5.1e-08 62.8 107 34.6


User provided reference genes

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