Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-111 405.2 207 100.0
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 4.2e-81 305.1 206 75.7
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.1e-76 287.3 206 71.8
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 9.1e-76 287.3 206 71.8
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-72 275.8 200 71.5
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 8.0e-72 274.2 206 67.0
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 8.0e-72 274.2 207 70.5
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-71 273.5 193 73.1
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-71 273.5 193 73.1
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-71 273.5 193 73.1
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 3.6e-64 248.8 176 71.6
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-63 246.1 176 71.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 4.0e-63 245.4 179 70.9
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 5.7e-62 241.5 177 68.4
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.2e-61 237.7 168 72.0
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.1e-57 227.3 196 59.2
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 9.4e-57 224.2 131 87.0
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.2e-55 218.4 165 69.7
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 1.8e-52 209.9 154 69.5
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.5e-49 200.3 195 53.8
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 4.4e-46 188.7 117 84.6
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 7.5e-46 188.0 142 71.1
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 7.8e-43 177.9 221 48.9
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.3e-41 172.6 106 82.1
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.3e-41 172.6 106 82.1
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 7.3e-41 171.4 106 81.1
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.4e-39 167.2 207 49.3
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-39 165.6 133 65.4
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 6.8e-39 164.9 196 46.4
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 6.8e-39 164.9 196 46.4
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 8.9e-39 164.5 196 46.4
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 8.9e-39 164.5 196 46.4
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 1.2e-38 164.1 196 45.9
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.4e-38 162.2 181 48.6
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.4e-38 162.2 181 48.6
CAN.G70.3 Capsicum annuum HOM05D002660 ORTHO05D003902 9.8e-38 161.0 137 66.4
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 8.3e-37 157.9 102 77.5
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 3.2e-36 156.0 171 51.5
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 7.3e-33 144.8 181 47.5
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-31 140.6 196 42.3
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-31 139.4 196 42.3
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-31 139.4 196 42.3
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-31 139.4 196 42.3
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 4.0e-31 139.0 196 42.3
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 5.2e-31 138.7 167 51.5
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 5.2e-31 138.7 92 76.1
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 3.4e-30 136.0 94 72.3
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 3.2e-28 129.4 87 77.0
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.1e-27 126.7 141 46.8
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 4.6e-27 125.6 124 54.0
CAN.G1159.14 Capsicum annuum HOM05D002660 ORTHO05D011807 2.3e-26 123.2 78 76.9
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-26 122.5 170 40.6
CAN.G1126.7 Capsicum annuum HOM05D002660 ORTHO05D011807 8.6e-26 121.3 78 75.6
CAN.G200.4 Capsicum annuum HOM05D002660 ORTHO05D011807 8.6e-26 121.3 78 75.6
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 3.3e-25 119.4 159 41.5
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 5.6e-25 118.6 158 43.0
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 9.5e-25 117.9 142 44.4
CAN.G134.22 Capsicum annuum HOM05D002660 ORTHO05D011807 6.2e-24 115.2 78 71.8
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 6.2e-24 115.2 182 37.4
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.8e-23 113.6 127 48.8
Solyc00g142160.1 Solanum lycopersicum HOM05D002660 ORTHO05D011807 5.8e-22 108.6 78 70.5
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 9.9e-22 107.8 109 52.3
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.9e-22 107.8 66 75.8
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.3e-21 107.5 182 36.8
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.3e-21 107.5 164 36.6
PGSC0003DMG400023071 Solanum tuberosum HOM05D002660 ORTHO05D011807 1.3e-21 107.5 78 67.9
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 2.2e-21 106.7 87 65.5
Nitab4.5_0001796g0150 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.9e-21 106.3 78 67.9
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 3.2e-20 102.8 124 41.9
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 7.1e-20 101.7 112 46.4
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.1e-20 101.7 111 55.9
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 9.2e-20 101.3 60 85.0
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-19 100.9 66 77.3
Nitab4.5_0000172g1900 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.1e-19 100.1 78 64.1
Nitab4.5_0027526g0010 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.7e-19 99.8 78 65.4
Solyc09g056110.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-18 97.8 204 36.8
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 1.3e-18 97.4 197 35.0
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 3.0e-18 96.3 142 40.1
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 3.0e-18 96.3 109 42.2
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 3.9e-18 95.9 193 34.2
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 3.9e-18 95.9 142 40.1
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 3.9e-18 95.9 142 40.1
Nitab4.5_0000592g0110 Nicotiana tabacum HOM05D002660 ORTHO05D011807 5.1e-18 95.5 78 62.8
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.6e-18 95.1 141 39.7
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 8.6e-18 94.7 134 42.5
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.1e-17 94.4 102 49.0
arahy.Tifrunner.gnm1.ann1.KBVE6B Arachis hypogaea HOM05D002660 ORTHO05D003902 3.3e-17 92.8 93 54.8
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 1.2e-16 90.9 125 40.0
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 8.1e-16 88.2 113 42.5
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 8.1e-16 88.2 99 44.4
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.4e-15 86.7 134 37.3
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 3.1e-15 86.3 157 39.5
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 3.1e-15 86.3 124 40.3
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 5.2e-15 85.5 143 36.4
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 5.2e-15 85.5 106 40.6
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.2e-15 85.5 105 40.0
Solyc11g030850.1 Solanum lycopersicum HOM05D002660 ORTHO05D011807 6.8e-15 85.1 70 62.9
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 6.8e-15 85.1 126 38.9
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 8.9e-15 84.7 118 40.7
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 1.2e-14 84.3 93 44.1
Nitab4.5_0001788g0190 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.5e-14 84.0 63 65.1
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.5e-14 84.0 205 33.2
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 2.0e-14 83.6 66 66.7
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 7.6e-14 81.6 131 38.2
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 1.7e-13 80.5 118 42.4
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 1.7e-13 80.5 118 42.4
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.2e-13 80.1 182 34.1
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.2e-13 80.1 155 32.3
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.2e-13 80.1 84 51.2
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.4e-13 78.2 55 72.7
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 1.4e-12 77.4 100 42.0
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 5.4e-12 75.5 92 41.3
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 9.2e-12 74.7 70 48.6
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 2.1e-11 73.6 103 41.7
Nitab4.5_0017902g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.5e-11 72.8 133 34.6
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 4.6e-11 72.4 127 34.6
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.0e-11 72.0 102 44.1
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.0e-11 72.0 102 44.1
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 7.8e-11 71.6 70 52.9
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 7.8e-11 71.6 102 37.3
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 1.0e-10 71.2 192 31.2
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 1.3e-10 70.9 124 36.3
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.7e-10 70.5 70 48.6
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-10 69.7 157 29.3
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 3.0e-10 69.7 133 33.1
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.1e-10 68.9 188 29.3
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 1.5e-09 67.4 176 30.1
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 1.5e-09 67.4 93 40.9
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 1.9e-09 67.0 148 35.8
Nitab4.5_0000172g0830 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.9e-09 67.0 80 51.2
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 4.3e-09 65.9 83 45.8
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.3e-09 65.1 119 33.6
SalBow1G8110 Salvia bowleyana HOM05D002660 ORTHO05D003902 9.6e-09 64.7 82 43.9
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.2e-08 64.3 154 33.1
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 2.1e-08 63.5 68 41.2
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 2.8e-08 63.2 141 34.0
Nitab4.5_0009709g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.6e-08 62.8 46 67.4
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 8.1e-08 61.6 88 36.4
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 8.1e-08 61.6 88 36.4
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 8.1e-08 61.6 64 51.6
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 2.4e-07 60.1 65 46.2
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.1e-07 59.7 87 40.2
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.1e-07 59.7 110 35.5
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 4.0e-07 59.3 169 28.4
SHI35758 Sapria himalayana HOM05D024615 ORTHO05D003902 5.3e-07 58.9 145 34.5
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 6.9e-07 58.5 124 33.1
MBI05_g23324_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 6.9e-07 58.5 173 29.5
Nitab4.5_0004300g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.2e-06 57.8 46 60.9
CsaV3_UNG194490 Cucumis sativus L. HOM05D002660 ORTHO05D003902 1.5e-06 57.4 74 44.6
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.6e-06 56.6 145 31.0
SHI04798 Sapria himalayana HOM05D024615 ORTHO05D003902 3.4e-06 56.2 73 43.8
SHI35938 Sapria himalayana HOM05D024615 ORTHO05D003902 3.4e-06 56.2 118 34.7
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 4.4e-06 55.8 100 33.0
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.8e-06 55.5 70 37.1
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 7.6e-06 55.1 39 53.8
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 7.6e-06 55.1 124 32.3


User provided reference genes

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