Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 2.0e-242 842.0 433 100.0
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 6.7e-198 694.1 435 83.0
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 8.2e-196 687.2 435 82.1
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 6.1e-191 671.0 408 86.0
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 8.0e-191 670.6 434 80.6
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 1.3e-188 663.3 408 85.3
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 7.2e-176 620.9 408 80.6
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 8.9e-150 534.3 435 64.1
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 3.2e-147 525.8 394 69.8
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 5.6e-144 515.0 391 67.3
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 8.9e-142 507.7 397 68.3
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 2.6e-141 506.1 395 67.3
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 7.6e-141 504.6 432 61.6
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 4.9e-140 501.9 446 60.8
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.1e-139 500.7 432 62.0
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 2.4e-139 499.6 391 68.5
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 3.5e-138 495.7 432 63.0
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.7e-137 493.4 405 64.7
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.7e-137 493.4 414 64.7
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 3.9e-137 492.3 432 60.2
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.5e-136 490.3 436 62.6
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.9e-136 490.0 434 62.2
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 4.3e-136 488.8 437 61.1
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 5.6e-136 488.4 398 64.1
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 1.6e-135 486.9 402 66.2
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 4.0e-134 482.3 428 60.3
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 5.3e-134 481.9 443 59.4
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 6.9e-134 481.5 388 66.2
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 6.9e-134 481.5 433 60.3
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 9.0e-134 481.1 436 61.7
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 1.2e-133 480.7 423 61.9
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 2.0e-133 479.9 451 59.9
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.4e-133 478.8 439 61.7
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 4.4e-133 478.8 406 64.8
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 5.8e-133 478.4 399 65.7
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 7.6e-133 478.0 436 60.6
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.3e-132 477.2 432 58.1
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.7e-132 476.9 396 62.6
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.9e-132 476.1 438 61.4
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 3.8e-132 475.7 436 60.8
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.2e-131 472.2 439 61.7
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 5.4e-131 471.9 415 61.2
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 7.1e-131 471.5 398 63.8
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 2.7e-130 469.5 435 59.5
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 3.5e-130 469.2 431 60.1
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 3.5e-130 469.2 392 64.3
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 7.8e-130 468.0 404 64.4
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 7.8e-130 468.0 430 59.5
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 7.8e-130 468.0 438 58.7
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.7e-129 466.8 375 66.7
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 3.0e-129 466.1 447 60.0
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 3.0e-129 466.1 410 62.0
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.1e-128 464.2 432 57.9
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 7.3e-128 461.5 439 58.3
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 7.3e-128 461.5 398 62.1
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 7.3e-128 461.5 439 57.9
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 2.8e-127 459.5 431 59.6
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 2.8e-127 459.5 443 57.8
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 3.6e-127 459.1 394 61.2
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 8.1e-127 458.0 431 59.4
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 1.5e-125 453.8 432 58.3
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 3.4e-125 452.6 401 60.8
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 4.5e-125 452.2 468 55.6
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.9e-124 448.7 434 57.6
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 6.4e-124 448.4 432 57.6
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.1e-123 447.6 435 58.2
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 7.1e-123 444.9 410 60.7
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.2e-122 444.1 402 60.4
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.6e-122 443.7 394 60.9
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.6e-122 443.7 432 57.2
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 2.1e-122 443.4 435 57.7
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 4.6e-122 442.2 433 57.3
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 4.6e-122 442.2 429 56.9
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 6.0e-122 441.8 398 62.3
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 7.9e-122 441.4 430 57.2
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 1.0e-121 441.0 433 56.6
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 5.1e-121 438.7 396 58.3
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.5e-120 437.2 431 55.7
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 4.3e-120 435.6 433 56.8
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 4.3e-120 435.6 433 56.8
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.3e-119 434.1 434 56.9
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.3e-119 434.1 434 56.9
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 2.1e-119 433.3 434 55.8
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 6.2e-119 431.8 390 59.2
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.8e-118 430.3 434 55.5
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 4.0e-118 429.1 444 53.6
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 2.6e-117 426.4 401 58.4
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.0e-116 424.5 377 63.1
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.4e-115 420.6 392 60.5
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.7e-114 416.4 375 61.9
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 1.8e-113 413.7 474 52.3
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 5.1e-113 412.1 368 62.0
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 8.7e-113 411.4 391 60.1
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 7.6e-109 398.3 391 57.3
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.7e-108 397.1 426 52.6
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 3.8e-108 396.0 395 53.7
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 2.3e-105 386.7 344 62.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 3.0e-105 386.3 355 62.0
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 1.6e-103 380.6 357 60.2
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 4.8e-95 352.4 413 51.1
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 6.3e-95 352.1 471 46.7
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.3e-92 344.4 261 68.6
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 7.0e-86 322.0 314 55.7
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 2.2e-76 290.4 446 42.4
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 5.5e-75 285.8 443 40.4
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 5.5e-75 285.8 443 40.4
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 5.5e-75 285.8 389 46.5
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 2.6e-72 276.9 396 44.7
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 4.7e-66 256.1 157 82.8
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.5e-35 154.8 407 31.9
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 3.7e-31 140.2 356 32.9
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 4.9e-31 139.8 181 47.0
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 2.4e-30 137.5 134 56.0
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.7e-28 131.3 122 54.9
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 3.6e-18 97.1 89 56.2
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 9.0e-17 92.4 167 37.7
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 5.8e-16 89.7 141 39.0
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 6.0e-13 79.7 50 70.0
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.9e-11 74.7 52 65.4
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 3.3e-11 73.9 50 66.0
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 3.3e-11 73.9 50 66.0
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 5.8e-08 63.2 46 60.9
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 7.6e-08 62.8 90 46.7
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.2e-06 57.0 90 45.6


User provided reference genes

Program Settings