Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 4482.9 2445 100.0
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 3811.5 2450 87.3
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 3669.0 2337 87.4
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 3623.6 2461 82.7
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 3620.1 2461 82.4
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 3448.7 2596 76.2
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2278.8 2515 58.8
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2124.4 2505 55.9
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 2088.2 2494 54.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2047.7 2540 53.5
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2044.2 2511 54.1
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2028.4 2534 53.9
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1993.8 2525 53.3
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1989.2 2507 52.7
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1984.9 2511 53.3
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1950.3 2538 51.7
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1946.4 2499 52.3
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1935.2 2512 52.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1933.7 2510 52.4
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1928.7 2184 58.0
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1917.5 2548 51.4
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1916.4 2506 53.1
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1902.5 2517 50.9
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1892.9 2517 51.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1892.1 2504 51.3
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1889.8 2514 51.1
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1880.9 2523 50.7
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1876.3 2543 50.8
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1871.7 2519 53.1
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1868.6 2522 50.7
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1860.9 2576 50.2
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1847.4 2572 49.8
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1846.6 2496 52.0
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1843.9 2529 50.5
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1840.5 2565 49.7
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1838.5 2488 51.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1834.3 2465 51.0
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1833.2 2574 49.8
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1817.4 2511 51.3
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1813.9 2541 49.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1805.8 2521 50.1
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1804.6 2521 50.0
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1800.0 2514 50.8
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1790.4 2516 49.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1771.9 2492 49.8
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1767.7 2026 57.1
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1748.8 2524 49.2
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1744.2 2482 49.7
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1727.2 2514 49.0
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1726.1 2510 48.6
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1707.2 2504 48.9
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1707.2 2494 48.8
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1699.9 2504 49.1
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1692.9 2499 49.1
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1688.3 2514 48.1
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1679.8 2508 48.9
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1664.8 2312 51.0
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1663.7 2502 48.0
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1661.7 2511 48.5
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1661.4 2532 46.5
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1650.6 2497 48.0
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1650.2 2489 48.0
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1644.0 2510 48.4
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1639.4 2524 47.5
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1638.6 2499 47.7
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1631.3 2445 48.0
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1616.7 2502 46.8
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1615.1 2527 48.3
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1613.6 2506 46.6
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1606.7 2465 47.5
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1588.5 2505 45.5
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1585.5 2571 47.4
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1575.8 2421 46.6
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1562.0 2568 43.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1553.9 2503 46.9
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1528.1 2377 45.8
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1510.7 2495 46.1
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1506.9 2489 46.1
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1487.6 2490 44.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1456.4 2477 45.4
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1403.7 2483 44.4
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1396.7 2512 44.4
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1393.3 2487 43.5
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1369.4 2610 40.9
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1367.1 1731 52.5
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1359.4 2513 43.2
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1329.7 2505 43.7
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1321.2 2488 42.6
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1317.8 2616 40.6
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1313.9 2529 41.2
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1298.1 1876 48.2
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1273.1 2492 41.4
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1272.7 2538 41.5
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1182.9 2592 40.2
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1168.7 2487 41.6
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1129.8 2504 41.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1106.3 2436 40.4
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1105.5 2478 39.2
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 5.0e-306 1055.8 2431 39.8
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.5e-298 1028.9 1300 52.4
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.9e-281 974.2 2411 36.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.6e-275 954.5 1705 44.9
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 1.6e-272 944.5 2397 37.5
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 4.7e-264 916.4 960 56.8
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.2e-245 854.4 2513 35.6
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.3e-232 812.0 446 92.2
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.2e-230 805.4 2731 34.9
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 4.0e-223 780.4 1058 51.5
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.0e-218 765.8 713 62.0
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.4e-212 745.3 945 55.3
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.4e-207 728.8 2426 34.2
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 3.6e-203 714.1 1029 50.7
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 3.9e-194 684.1 2444 34.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.0e-193 681.8 2414 34.3
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.0e-193 681.8 2414 34.3
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.1e-191 674.5 2446 34.3
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 3.6e-187 661.0 2457 33.9
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 7.5e-169 600.1 2575 30.8
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.8e-168 597.4 1920 35.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 3.1e-167 594.7 968 44.9
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.4e-159 569.3 566 60.1
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.4e-153 547.7 1809 32.3
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 4.3e-148 531.2 1412 36.8
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 2.8e-147 528.5 505 56.2
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.4e-143 516.2 931 41.8
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.0e-122 444.9 780 42.4
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.6e-115 421.8 671 46.1
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.9e-108 399.4 2850 28.0
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 2.8e-99 369.0 1813 30.7
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 7.1e-95 354.4 999 34.0
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.2e-94 353.6 1230 31.0
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 6.7e-85 321.2 2743 28.7
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 5.7e-76 291.6 297 52.5
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.0e-64 254.2 2739 28.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 8.8e-61 241.1 434 39.6
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 7.5e-60 238.0 1051 31.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.8e-58 233.4 2801 27.8
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 4.7e-54 218.8 550 33.8
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.8e-53 214.9 2404 26.0
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.2e-52 214.2 248 56.9
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.4e-52 212.2 242 56.6
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 4.7e-46 192.2 308 43.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.5e-44 187.2 585 32.3
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.5e-39 169.9 223 48.4
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 4.1e-34 152.5 508 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 2.2e-27 130.2 2179 27.3
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 8.3e-27 128.3 74 77.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.7e-25 123.2 154 53.9
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 3.5e-25 122.9 154 53.9
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 6.6e-24 118.6 317 33.4
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.6e-23 115.5 250 41.2
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.1e-21 111.3 119 52.9
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 2.5e-15 90.1 145 42.1
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.1e-14 87.0 63 63.5
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 3.6e-14 86.3 61 65.6
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.2e-12 81.3 73 65.8
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.4e-12 79.7 123 40.7
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.3e-08 67.8 126 40.5
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 3.9e-08 66.2 58 56.9
unitig_899.g14934 Utricularia gibba HOM05D004560 ORTHO05D037471 6.6e-08 65.5 77 61.0
unitig_736.g22378 Utricularia gibba HOM05D004560 ORTHO05D037471 2.5e-07 63.5 77 59.7
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 1.6e-06 60.8 97 41.2
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.1e-06 60.5 130 36.9


User provided reference genes

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