Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 3647.4 1845 100.0
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2938.3 1846 81.6
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1914.4 1265 77.6
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1898.2 1257 77.3
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1815.4 1258 73.9
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 0.0e+00 1798.5 1172 79.6
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1436.0 1886 43.6
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1328.5 1865 42.0
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1234.9 1883 39.0
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1202.6 1880 38.8
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1151.7 1928 37.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1141.7 1924 37.4
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1106.3 1882 36.8
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1101.7 1880 37.2
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1097.0 1905 36.1
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1094.7 1897 36.2
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 1.4e-308 1063.9 1897 35.7
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 1.5e-307 1060.4 1896 36.4
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 3.8e-306 1055.8 1867 35.5
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 8.4e-306 1054.7 1877 36.3
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 7.3e-294 1015.0 1938 34.5
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 8.1e-293 1011.5 1712 37.5
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 1.5e-291 1007.3 1904 34.9
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 1.8e-287 993.8 1861 34.8
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 8.7e-287 991.5 1859 34.9
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 7.6e-283 978.4 1917 33.9
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.7e-280 969.9 1943 33.8
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 5.1e-279 965.7 1944 33.8
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 1.9e-278 963.8 1944 33.8
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 2.5e-278 963.4 1856 34.0
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 2.1e-277 960.3 1894 33.9
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 1.8e-276 957.2 1913 33.9
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 2.4e-276 956.8 1885 34.4
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 5.3e-276 955.7 1889 33.6
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 3.0e-271 939.9 1880 33.5
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 1.6e-269 934.1 1890 33.8
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 1.9e-265 920.6 1886 33.2
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 3.8e-258 896.3 1904 33.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 4.2e-257 892.9 1894 32.3
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 4.7e-256 889.4 1899 32.9
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.0e-251 874.0 1878 32.7
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 7.2e-249 865.5 1969 31.4
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.7e-248 863.6 2000 31.6
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 8.2e-245 852.0 1910 32.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 3.1e-244 850.1 1888 31.1
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 7.0e-244 849.0 1888 32.8
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.2e-240 838.2 1899 31.9
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 1.8e-239 834.3 1900 32.0
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 1.4e-236 824.7 1910 32.0
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 8.5e-234 815.5 1912 31.9
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 4.2e-233 813.1 1906 31.3
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 2.3e-231 807.4 1919 31.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 5.2e-231 806.2 1921 30.9
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 4.4e-230 803.1 1897 31.3
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 2.8e-229 800.4 1906 31.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.6e-224 784.6 1892 30.7
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.3e-218 764.2 1595 33.2
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 1.1e-217 761.9 1884 30.9
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 4.3e-217 760.0 480 80.4
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 3.4e-214 750.4 1526 34.4
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 3.5e-211 740.3 1908 30.1
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.6e-208 731.5 1893 30.4
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 3.4e-206 723.8 1906 28.6
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 4.1e-204 716.8 1902 30.5
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 3.0e-202 710.7 1952 29.0
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 5.6e-201 706.4 1878 30.5
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 1.2e-200 705.3 1893 30.2
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 3.6e-200 703.7 1899 30.1
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.4e-199 701.8 1885 29.2
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 7.6e-198 696.0 1806 29.9
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 5.4e-196 689.9 1904 30.1
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 5.4e-196 689.9 1904 30.1
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 7.1e-196 689.5 1893 30.0
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 1.6e-195 688.3 1902 30.0
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.9e-189 667.5 1726 30.0
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 1.9e-188 664.8 1911 29.8
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 1.3e-186 658.7 1899 28.4
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 1.9e-185 654.8 1814 29.4
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 1.8e-183 648.3 994 39.9
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 8.4e-181 639.4 379 81.5
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 5.8e-174 616.7 873 41.5
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 2.2e-173 614.8 1951 27.6
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 6.2e-160 570.1 1575 30.0
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 2.7e-155 554.7 884 37.6
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 8.2e-152 543.1 303 87.1
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 2.0e-150 538.5 1865 26.9
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.4e-148 532.3 968 34.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 1.2e-142 512.7 1907 26.0
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.5e-142 510.8 290 85.5
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 5.9e-142 510.4 734 41.1
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 9.4e-140 503.1 905 37.5
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 7.4e-137 493.4 1573 27.5
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 4.5e-134 484.2 1176 32.1
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 8.8e-130 469.9 923 34.9
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 5.3e-127 460.7 992 33.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 2.5e-124 451.8 977 32.9
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.6e-115 421.4 1930 24.4
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 7.8e-102 377.1 936 29.3
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.5e-100 372.9 857 30.3
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.3e-90 339.0 884 29.2
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.0e-65 256.1 382 42.4
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.5e-60 240.0 1232 24.8
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 2.0e-57 229.6 465 29.9
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 2.4e-55 222.6 476 29.6
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 5.5e-55 221.5 464 30.8
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.7e-54 219.2 343 38.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.9e-52 213.0 678 27.1
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 4.0e-50 205.3 300 40.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.5e-39 169.5 415 30.8
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.3e-35 157.1 158 50.0
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 2.0e-33 149.8 732 22.8
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 3.4e-25 122.5 182 36.3
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 3.4e-25 122.5 110 47.3
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 5.0e-24 118.6 200 34.5
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 3.0e-21 109.4 474 24.5
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-19 101.7 716 20.9
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.6e-17 97.1 694 21.8
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 1.6e-14 87.0 115 41.7
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 4.7e-14 85.5 72 59.7
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 6.1e-14 85.1 121 40.5
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 1.4e-13 84.0 223 23.3
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 1.1e-12 80.9 175 26.9
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 7.5e-12 78.2 211 26.5
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 7.0e-10 71.6 75 48.0
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 3.2e-07 62.8 656 20.1


User provided reference genes

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