Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 4.9e-234 814.3 475 100.0
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.0e-194 683.7 476 83.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.5e-190 669.8 476 80.5
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.3e-190 668.7 476 81.9
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.2e-186 656.0 479 78.9
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.4e-182 641.7 480 77.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.0e-170 601.7 475 74.7
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 7.5e-150 534.6 483 68.5
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.3e-146 523.9 485 64.5
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.3e-145 519.2 489 64.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.6e-144 516.9 481 69.0
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.6e-139 500.4 481 66.5
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.7e-138 496.9 470 63.6
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.6e-136 490.3 481 61.7
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 5.2e-135 485.3 480 60.6
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 6.8e-135 485.0 478 62.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 4.9e-133 478.8 484 60.7
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.9e-132 476.9 480 66.0
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.4e-132 476.5 484 60.3
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 3.2e-132 476.1 484 60.1
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 3.5e-131 472.6 488 60.5
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.6e-131 472.2 480 64.4
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.9e-129 466.8 496 59.3
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 3.3e-129 466.1 487 60.0
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 9.5e-129 464.5 489 61.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-127 461.1 489 61.3
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.4e-127 460.7 477 58.9
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.2e-126 457.6 481 61.3
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.6e-126 456.4 486 60.3
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.4e-126 455.7 486 61.9
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.8e-126 455.3 466 61.4
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 7.5e-126 454.9 488 60.2
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 9.9e-126 454.5 467 63.4
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.9e-125 453.0 475 61.9
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.7e-125 452.6 475 61.9
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 6.4e-125 451.8 505 56.6
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 7.1e-124 448.4 431 60.6
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.6e-123 447.2 502 56.2
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 3.0e-122 443.0 464 58.4
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 5.1e-122 442.2 483 56.9
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 6.6e-122 441.8 489 56.6
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-121 441.0 487 58.9
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.5e-121 439.9 478 58.6
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.4e-119 434.1 490 57.3
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.8e-119 433.7 488 58.4
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.8e-119 433.7 485 61.0
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.6e-118 429.9 586 50.3
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 4.4e-118 429.1 481 54.1
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 4.4e-118 429.1 490 57.8
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 7.6e-118 428.3 483 59.2
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.4e-117 425.2 491 56.6
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.4e-117 425.2 485 59.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.4e-116 423.3 488 56.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 5.4e-116 422.2 479 54.9
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 5.4e-116 422.2 496 57.1
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.6e-115 420.6 422 61.6
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.1e-115 420.2 493 54.0
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.1e-115 420.2 469 60.1
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.8e-115 418.3 491 56.2
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 7.8e-115 418.3 460 59.1
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 8.6e-114 414.8 458 59.8
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 8.6e-114 414.8 474 54.4
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.9e-113 413.7 479 54.7
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 7.3e-113 411.8 485 54.4
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 9.6e-113 411.4 481 56.5
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.4e-111 407.5 487 54.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.4e-111 407.5 477 57.7
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.4e-111 407.5 474 55.3
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.2e-110 404.4 488 56.4
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.5e-110 404.1 498 55.8
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 2.6e-110 403.3 509 53.6
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 3.4e-110 402.9 474 59.9
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 9.9e-110 401.4 496 51.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 9.9e-110 401.4 449 55.7
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.7e-109 400.6 481 55.1
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.2e-109 400.2 480 56.0
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.9e-109 399.8 534 49.3
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 4.2e-108 396.0 459 55.6
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 7.1e-108 395.2 491 53.4
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 7.1e-108 395.2 494 51.2
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.0e-106 389.8 481 56.5
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 3.9e-106 389.4 479 54.3
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 2.5e-105 386.7 501 50.9
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 9.6e-105 384.8 510 49.2
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 9.6e-105 384.8 507 49.7
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 9.6e-105 384.8 430 54.4
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.3e-104 384.4 524 51.5
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.6e-104 384.0 377 63.4
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 4.8e-104 382.5 479 53.4
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 6.2e-104 382.1 504 52.2
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 3.1e-103 379.8 489 53.2
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 4.0e-103 379.4 468 51.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.0e-103 379.4 331 70.7
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.5e-99 366.3 495 51.9
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.8e-98 364.0 497 53.1
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.8e-98 364.0 482 52.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 3.0e-98 363.2 487 49.5
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.5e-97 360.1 481 53.2
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.6e-96 357.5 363 62.0
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.8e-96 356.7 494 51.8
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.0e-95 352.8 513 49.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 9.0e-95 351.7 581 44.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.6e-94 348.6 469 53.3
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.3e-93 347.8 480 49.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.4e-93 345.5 462 50.6
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 2.4e-92 343.6 467 51.2
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 4.6e-91 339.3 431 55.2
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 6.7e-90 335.5 460 52.6
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.2e-88 328.9 469 49.9
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.4e-86 323.2 546 42.5
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.6e-86 322.0 478 50.0
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 1.0e-85 321.6 245 73.1
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.4e-84 317.8 471 48.4
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.6e-83 314.3 280 64.6
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 7.9e-83 312.0 472 46.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.9e-81 307.4 437 50.1
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.6e-80 304.3 408 52.2
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 6.3e-80 302.4 482 43.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.1e-79 301.6 460 49.3
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.0e-78 297.4 265 68.3
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.2e-77 293.9 423 46.6
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 7.9e-75 285.4 498 43.0
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 3.7e-72 276.6 446 46.2
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 6.9e-71 272.3 287 62.4
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 3.9e-66 256.5 438 45.9
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 8.2e-64 248.8 396 46.7
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.7e-56 224.6 286 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.3e-45 188.3 478 32.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.1e-43 181.0 275 45.8
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.2e-41 175.3 466 32.6
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 7.5e-33 146.0 449 29.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.7e-30 137.5 174 47.7
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.0e-29 135.6 94 70.2
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.8e-27 127.5 440 35.5
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 8.9e-26 122.5 173 42.8
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.0e-25 121.3 315 32.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.7e-24 118.2 79 67.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.7e-24 118.2 82 76.8
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 6.4e-24 116.3 193 44.0
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 8.3e-24 115.9 67 77.6
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 5.0e-21 106.7 186 42.5
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-19 101.7 100 61.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 2.3e-18 97.8 181 44.2
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 4.4e-17 93.6 272 34.6
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.8e-17 93.2 166 46.4
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.7e-16 90.5 193 39.4
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.9e-15 88.2 148 40.5
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.2e-15 87.4 154 42.2
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.6e-14 85.1 308 28.9
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.0e-13 82.4 397 30.0
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.0e-13 82.4 193 37.3
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 2.3e-13 81.3 317 30.6
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 3.1e-10 70.9 151 47.0
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 4.0e-10 70.5 112 42.0
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 9.9e-09 65.9 70 48.6
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 2.4e-07 61.2 79 51.9
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 3.2e-07 60.8 53 60.4


User provided reference genes

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