Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 3.1e-60 235.0 120 100.0
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 4.2e-49 198.0 109 90.8
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 5.5e-49 197.6 104 94.2
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.2e-48 196.4 110 88.2
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 1.1e-41 173.3 89 94.4
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 1.0e-39 166.8 104 77.9
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 3.2e-33 145.2 103 67.0
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 3.6e-32 141.7 120 60.8
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 3.9e-31 138.3 101 66.3
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 5.2e-31 137.9 87 73.6
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 6.7e-31 137.5 99 69.7
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 1.1e-30 136.7 108 64.8
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 1.5e-30 136.3 99 67.7
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 2.0e-30 136.0 88 73.9
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 2.0e-30 136.0 97 69.1
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 2.0e-30 136.0 100 64.0
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 2.6e-30 135.6 102 64.7
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 3.3e-30 135.2 105 62.9
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 5.7e-30 134.4 107 63.6
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 7.4e-30 134.0 86 75.6
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 7.4e-30 134.0 100 65.0
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 9.7e-30 133.7 103 60.2
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 9.7e-30 133.7 86 75.6
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 9.7e-30 133.7 86 75.6
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 9.7e-30 133.7 86 75.6
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 1.3e-29 133.3 100 67.0
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 1.3e-29 133.3 102 63.7
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.2e-29 132.5 108 62.0
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 3.7e-29 131.7 104 64.4
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 4.8e-29 131.3 102 61.8
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 6.3e-29 131.0 84 71.4
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 8.2e-29 130.6 108 61.1
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 8.2e-29 130.6 103 62.1
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 1.4e-28 129.8 100 65.0
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.4e-28 129.8 103 59.2
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 1.4e-28 129.8 104 60.6
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 1.4e-28 129.8 100 60.0
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 1.4e-28 129.8 100 66.0
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 1.4e-28 129.8 100 66.0
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 2.4e-28 129.0 87 70.1
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 2.4e-28 129.0 100 62.0
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 4.1e-28 128.3 104 60.6
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 7.0e-28 127.5 95 68.4
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 7.0e-28 127.5 86 69.8
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 7.0e-28 127.5 87 72.4
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 7.0e-28 127.5 104 60.6
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 7.0e-28 127.5 63 96.8
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 2.0e-27 125.9 83 69.9
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 2.0e-27 125.9 100 60.0
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 2.0e-27 125.9 100 60.0
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 2.0e-27 125.9 87 66.7
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 2.0e-27 125.9 86 69.8
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 2.6e-27 125.6 88 67.0
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 3.5e-27 125.2 103 64.1
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 4.5e-27 124.8 82 70.7
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 4.5e-27 124.8 82 70.7
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 4.5e-27 124.8 82 70.7
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 4.5e-27 124.8 91 64.8
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 5.9e-27 124.4 84 69.0
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 5.9e-27 124.4 88 67.0
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 5.9e-27 124.4 90 64.4
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 5.9e-27 124.4 98 63.3
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 5.9e-27 124.4 82 72.0
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 1.0e-26 123.6 87 65.5
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.3e-26 123.2 87 65.5
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 2.2e-26 122.5 88 67.0
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 2.9e-26 122.1 82 70.7
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 2.9e-26 122.1 103 56.3
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 2.9e-26 122.1 93 60.2
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 3.8e-26 121.7 86 69.8
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 3.8e-26 121.7 83 67.5
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 6.5e-26 120.9 95 61.1
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 8.5e-26 120.6 96 60.4
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 1.5e-25 119.8 86 65.1
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 1.9e-25 119.4 104 56.7
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 2.5e-25 119.0 89 62.9
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 3.2e-25 118.6 113 51.3
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 7.2e-25 117.5 104 55.8
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 7.2e-25 117.5 88 63.6
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 9.4e-25 117.1 87 64.4
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 1.2e-24 116.7 80 67.5
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 2.1e-24 115.9 96 56.2
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 3.6e-24 115.2 77 72.7
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 6.1e-24 114.4 98 54.1
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 5.2e-23 111.3 96 55.2
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 1.2e-22 110.2 98 52.0
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 1.5e-22 109.8 100 53.0
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 1.5e-22 109.8 99 50.5
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 2.0e-22 109.4 100 52.0
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 2.0e-22 109.4 100 52.0
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 2.0e-22 109.4 100 52.0
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 2.0e-22 109.4 100 52.0
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 2.0e-22 109.4 100 52.0
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 2.6e-22 109.0 92 62.0
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 3.3e-22 108.6 96 53.1
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 4.4e-22 108.2 107 48.6
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 7.5e-22 107.5 102 50.0
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 1.3e-21 106.7 95 51.6
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 2.2e-21 105.9 86 61.6
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 4.8e-21 104.8 107 45.8
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 1.4e-20 103.2 99 48.5
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 1.4e-20 103.2 83 55.4
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 1.8e-20 102.8 82 54.9
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 2.0e-19 99.4 86 50.0
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 4.5e-19 98.2 86 48.8
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 2.2e-18 95.9 107 46.7
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 1.2e-16 90.1 81 45.7
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 3.6e-16 88.6 84 51.2
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 4.4e-14 81.6 83 47.0
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 1.6e-11 73.2 84 40.5
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 1.7e-10 69.7 73 42.5
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 3.8e-10 68.6 82 35.4
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 4.2e-09 65.1 84 40.5
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 7.2e-09 64.3 80 37.5


User provided reference genes

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