Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G83.4 Capsicum annuum HOM05D003787 ORTHO05D001736 5.9e-184 647.5 356 100.0
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.8e-116 423.3 365 71.0
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 6.9e-116 421.4 345 73.9
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.2e-106 389.8 362 65.5
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 1.0e-103 380.9 366 63.9
Solyc03g059470.1 Solanum lycopersicum HOM05D003787 ORTHO05D001736 2.5e-81 306.6 361 56.2
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 8.3e-69 265.0 359 54.6
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 5.0e-58 229.2 412 47.6
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 2.0e-54 217.2 403 43.9
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.0e-54 217.2 356 48.9
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 3.3e-49 199.9 250 52.0
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 5.6e-49 199.1 416 43.0
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 5.6e-41 172.6 411 41.6
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 8.1e-40 168.7 363 40.2
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 1.5e-30 137.9 353 36.3
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.7e-29 134.4 350 36.6
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.6e-27 126.3 275 38.2
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.1e-25 121.7 312 35.3
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.8e-23 114.4 351 31.3
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.0e-22 110.9 369 32.8
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 3.4e-22 110.2 348 33.9
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.3e-21 108.2 291 35.1
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.9e-21 106.3 301 34.2
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 8.4e-21 105.5 301 34.2
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 1.9e-20 104.4 288 35.1
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 3.2e-20 103.6 300 34.7
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.2e-20 103.2 280 35.4
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 1.2e-19 101.7 282 35.8
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 5.1e-18 96.3 211 37.0
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 1.3e-16 91.7 352 32.1
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 2.4e-15 87.4 264 39.4
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 3.1e-15 87.0 269 32.3
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 9.0e-15 85.5 282 33.3
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.2e-14 85.1 93 52.7
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.2e-14 85.1 366 28.7
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 1.5e-14 84.7 356 32.0
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 4.5e-14 83.2 264 40.5
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 5.8e-14 82.8 338 34.3
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 1.0e-13 82.0 220 38.2
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 6.5e-13 79.3 267 34.8
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.9e-12 77.8 203 34.0
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.9e-12 77.8 183 37.7
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 4.2e-12 76.6 390 29.5
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 5.5e-12 76.3 281 31.0
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 1.6e-11 74.7 253 28.9
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 1.6e-11 74.7 342 30.1
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.1e-11 74.3 156 34.6
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 3.5e-11 73.6 116 44.0
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.5e-11 73.6 270 28.9
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 7.9e-11 72.4 76 52.6
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 7.9e-11 72.4 216 34.3
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 7.9e-11 72.4 153 32.7
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 1.0e-10 72.0 268 32.1
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 1.0e-10 72.0 100 45.0
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 1.3e-10 71.6 136 39.0
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 1.3e-10 71.6 350 30.3
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 1.8e-10 71.2 296 30.1
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 3.0e-10 70.5 278 34.5
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 3.9e-10 70.1 198 33.8
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 3.9e-10 70.1 369 27.9
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.1e-10 69.7 74 52.7
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 8.7e-10 68.9 280 32.9
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 8.7e-10 68.9 364 27.7
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.1e-09 68.6 286 30.8
HanXRQChr07g0199751 Helianthus annuus HOM05D003787 ORTHO05D001736 1.1e-09 68.6 265 30.9
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 1.5e-09 68.2 93 50.5
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.5e-09 68.2 268 29.5
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 1.5e-09 68.2 295 29.8
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.9e-09 67.8 207 31.9
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.9e-09 67.8 353 28.3
MSTRG.755 Avicennia marina HOM05D011975 ORTHO05D001736 2.5e-09 67.4 89 44.9
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.3e-09 67.0 237 31.6
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 3.3e-09 67.0 294 33.3
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 3.3e-09 67.0 297 30.3
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 3.3e-09 67.0 274 33.2
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 3.3e-09 67.0 285 33.7
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 4.3e-09 66.6 281 31.7
unitig_899.g15099 Utricularia gibba HOM05D003787 ORTHO05D001736 5.7e-09 66.2 345 27.8
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 7.4e-09 65.9 271 36.2
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 7.4e-09 65.9 302 30.5
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 7.4e-09 65.9 343 28.6
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 7.4e-09 65.9 282 30.1
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 9.6e-09 65.5 220 33.6
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 9.6e-09 65.5 94 47.9
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 9.6e-09 65.5 276 34.4
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 9.6e-09 65.5 221 32.6
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.3e-08 65.1 203 32.0
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.3e-08 65.1 311 29.9
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.3e-08 65.1 274 29.9
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.6e-08 64.7 175 34.9
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 1.6e-08 64.7 272 32.7
Nitab4.5_0026364g0010 Nicotiana tabacum HOM05D011975 ORTHO05D001736 1.6e-08 64.7 146 34.9
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 2.1e-08 64.3 59 59.3
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 2.8e-08 63.9 305 30.5
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 2.8e-08 63.9 257 34.2
Dinv34065 Davidia involucrata HOM05D003787 ORTHO05D001736 2.8e-08 63.9 143 37.1
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 2.8e-08 63.9 152 33.6
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 2.8e-08 63.9 320 27.5
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 3.7e-08 63.5 204 33.8
Lalb_Chr04g0255641 Lupinus albus HOM05D014318 ORTHO05D001736 3.7e-08 63.5 289 29.4
Lalb_Chr17g0341211 Lupinus albus HOM05D014318 ORTHO05D001736 4.8e-08 63.2 289 29.1
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 4.8e-08 63.2 252 27.4
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 6.3e-08 62.8 292 28.4
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 6.3e-08 62.8 234 32.1
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 6.3e-08 62.8 256 31.6
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 6.3e-08 62.8 140 37.9
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 8.2e-08 62.4 198 33.8
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 8.2e-08 62.4 257 34.6
Nitab4.5_0003583g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 8.2e-08 62.4 145 32.4
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.1e-07 62.0 108 43.5
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 1.1e-07 62.0 293 28.7
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 1.1e-07 62.0 293 30.7
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 1.1e-07 62.0 89 49.4
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.4e-07 61.6 167 35.9
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 1.4e-07 61.6 66 57.6
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.4e-07 61.6 187 35.8
VMungo1215G1514 Vigna mungo HOM05D014318 ORTHO05D001736 1.4e-07 61.6 161 37.9
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.8e-07 61.2 232 31.5
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 1.8e-07 61.2 213 31.9
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.8e-07 61.2 210 28.6
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 1.8e-07 61.2 350 31.1
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.4e-07 60.8 78 51.3
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 2.4e-07 60.8 78 51.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.4e-07 60.8 78 51.3
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 2.4e-07 60.8 78 51.3
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.4e-07 60.8 208 31.2
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.4e-07 60.8 228 31.1
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 2.4e-07 60.8 75 48.0
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 3.1e-07 60.5 78 51.3
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 3.1e-07 60.5 198 33.3
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.1e-07 60.5 180 38.3
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 5.3e-07 59.7 112 35.7
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 5.3e-07 59.7 82 48.8
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 6.9e-07 59.3 77 50.6
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 6.9e-07 59.3 199 32.7
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 6.9e-07 59.3 270 30.7
Nitab4.5_0001118g0030 Nicotiana tabacum HOM05D011975 ORTHO05D001736 6.9e-07 59.3 94 43.6
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 6.9e-07 59.3 205 30.2
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 6.9e-07 59.3 144 36.1
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 6.9e-07 59.3 355 29.6
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 9.0e-07 58.9 216 30.6
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 1.2e-06 58.5 217 31.3
FAN17G0759 Fragaria x ananassa HOM05D003787 ORTHO05D001736 1.2e-06 58.5 117 39.3
CAN.G497.106 Capsicum annuum HOM05D003787 ORTHO05D001736 1.5e-06 58.2 104 42.3
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.5e-06 58.2 197 33.0
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 1.5e-06 58.2 78 50.0
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.5e-06 58.2 68 52.9
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.5e-06 58.2 217 31.8
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 2.0e-06 57.8 55 60.0
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 2.0e-06 57.8 304 28.3
Peaxi162Scf00026g00163 Petunia axillaris HOM05D011975 ORTHO05D001736 2.0e-06 57.8 71 46.5
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.0e-06 57.8 288 31.9
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 2.6e-06 57.4 74 50.0
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 2.6e-06 57.4 374 30.7
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.4e-06 57.0 214 31.8
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 3.4e-06 57.0 201 29.4
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 4.5e-06 56.6 270 35.9
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 4.5e-06 56.6 145 33.8
THA.LOC104800368 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 4.5e-06 56.6 63 50.8
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 4.5e-06 56.6 105 42.9
arahy.Tifrunner.gnm1.ann1.1H4V42 Arachis hypogaea HOM05D003787 ORTHO05D001736 5.9e-06 56.2 145 33.1
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 5.9e-06 56.2 103 35.9
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 5.9e-06 56.2 330 26.7
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 5.9e-06 56.2 68 50.0
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 5.9e-06 56.2 269 28.6
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 7.6e-06 55.8 302 31.8
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 7.6e-06 55.8 86 46.5
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 7.6e-06 55.8 81 45.7
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 7.6e-06 55.8 312 27.2
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 7.6e-06 55.8 183 32.8
Gorai.013G094300 Gossypium raimondii HOM05D003787 ORTHO05D001736 7.6e-06 55.8 183 32.8
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 7.6e-06 55.8 219 31.1
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 7.6e-06 55.8 137 35.8
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.0e-05 55.5 260 30.0
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 1.0e-05 55.5 202 32.2
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.0e-05 55.5 136 37.5
Oeu004587.1 Olea europaea HOM05D011975 ORTHO05D001736 1.0e-05 55.5 57 47.4


User provided reference genes

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