Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 3.6e-160 568.2 282 100.0
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 3.0e-138 495.4 284 87.7
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 6.9e-135 484.2 293 86.0
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 6.9e-135 484.2 284 86.3
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 1.5e-134 483.0 284 85.9
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 4.5e-134 481.5 294 84.7
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 5.8e-134 481.1 291 85.6
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 9.1e-111 404.1 285 74.0
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 1.1e-108 397.1 264 76.5
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 2.5e-108 396.0 261 76.6
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 3.2e-108 395.6 247 79.4
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 4.2e-108 395.2 231 84.4
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 5.5e-108 394.8 231 84.4
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 9.4e-108 394.0 234 82.9
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 9.4e-108 394.0 240 84.2
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 1.2e-107 393.7 288 73.3
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 1.2e-107 393.7 242 81.8
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 2.1e-107 392.9 234 84.2
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 2.1e-107 392.9 232 83.2
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 2.1e-107 392.9 263 76.4
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 2.7e-107 392.5 288 73.3
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 6.1e-107 391.3 240 80.8
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 7.9e-107 391.0 262 77.1
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 7.9e-107 391.0 272 72.8
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 3.0e-106 389.0 234 83.3
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 6.7e-106 387.9 231 82.3
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 6.7e-106 387.9 234 83.3
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 1.1e-105 387.1 292 69.9
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 1.5e-105 386.7 234 81.6
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 3.3e-105 385.6 293 69.6
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 1.3e-104 383.6 266 76.3
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 1.3e-104 383.6 230 81.7
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 2.2e-104 382.9 279 71.7
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 2.2e-104 382.9 284 71.1
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 3.7e-104 382.1 287 71.1
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 4.8e-104 381.7 263 74.9
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 6.3e-104 381.3 212 87.3
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 6.3e-104 381.3 235 80.0
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 8.2e-104 380.9 262 75.2
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 1.8e-103 379.8 271 72.0
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 4.1e-103 378.6 233 81.5
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 5.3e-103 378.3 233 80.7
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 5.3e-103 378.3 233 80.7
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 5.3e-103 378.3 236 80.9
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 5.3e-103 378.3 230 82.2
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 7.0e-103 377.9 233 81.1
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 9.1e-103 377.5 289 70.9
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 1.2e-102 377.1 236 79.2
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 1.2e-102 377.1 274 71.2
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 4.5e-102 375.2 240 80.0
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 4.5e-102 375.2 278 68.7
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 7.7e-102 374.4 270 72.2
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 1.0e-101 374.0 341 62.5
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 1.3e-101 373.6 318 65.1
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 1.3e-101 373.6 234 79.1
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 1.7e-101 373.2 232 79.7
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 2.2e-101 372.9 249 76.7
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 2.2e-101 372.9 288 70.1
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 2.2e-101 372.9 233 79.8
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 2.2e-101 372.9 234 79.5
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 2.2e-101 372.9 298 68.1
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 2.9e-101 372.5 242 77.7
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 2.9e-101 372.5 233 79.8
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 3.8e-101 372.1 231 80.1
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 3.8e-101 372.1 274 70.1
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 3.8e-101 372.1 268 72.8
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 5.0e-101 371.7 236 77.5
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 6.5e-101 371.3 233 79.8
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 8.5e-101 370.9 233 80.3
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 1.1e-100 370.5 233 80.7
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 1.5e-100 370.2 285 67.7
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 3.2e-100 369.0 282 68.8
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 7.2e-100 367.9 268 72.0
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 3.6e-99 365.5 273 71.8
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 4.7e-99 365.2 281 70.5
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 4.7e-99 365.2 281 70.5
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 1.0e-98 364.0 279 68.8
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 1.8e-98 363.2 260 72.7
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 3.0e-98 362.5 277 67.5
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 2.6e-97 359.4 235 76.6
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 5.7e-97 358.2 272 69.1
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 7.4e-97 357.8 292 66.8
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 2.8e-96 355.9 271 67.5
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 3.7e-96 355.5 282 66.0
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 8.2e-96 354.4 233 75.5
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 1.4e-95 353.6 240 73.3
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 3.1e-95 352.4 227 75.8
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 7.0e-95 351.3 271 67.5
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 7.0e-95 351.3 271 67.5
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 9.1e-95 350.9 363 56.2
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 2.0e-94 349.7 271 67.2
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 2.0e-94 349.7 227 75.3
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 4.5e-94 348.6 220 79.5
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 1.3e-93 347.1 266 66.5
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 1.7e-93 346.7 300 61.7
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 6.5e-93 344.7 265 66.4
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 4.1e-87 325.5 231 69.3
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 7.7e-86 321.2 294 62.2
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 1.0e-85 320.9 230 69.6
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 3.0e-82 309.3 218 77.1
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 1.1e-79 300.8 193 78.8
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 2.0e-78 296.6 275 60.0
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 4.7e-75 285.4 232 58.2
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 6.8e-74 281.6 201 64.7
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 1.6e-70 270.4 202 63.4
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 1.1e-68 264.2 173 74.0
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 5.6e-68 261.9 166 78.3
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 5.8e-65 251.9 214 57.9
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 4.4e-41 172.6 268 42.5
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 1.3e-35 154.5 177 52.5
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 4.0e-34 149.4 176 43.8
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 2.2e-32 143.7 95 77.9
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 3.5e-30 136.3 121 50.4
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 6.6e-29 132.1 94 74.5
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 7.4e-28 128.6 85 74.1
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 1.8e-26 124.0 156 42.3
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 1.6e-22 110.9 131 43.5
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 1.2e-09 68.2 80 46.2
GSVIVG01036421001 Vitis vinifera HOM05D006690 ORTHO05D008541 8.4e-08 62.0 76 51.3


User provided reference genes

Program Settings