Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G827.3 Capsicum annuum HOM05D003605 ORTHO05D004292 1.1e-56 223.0 113 100.0
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 5.6e-19 97.8 91 59.3
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 9.5e-19 97.1 91 57.1
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.6e-18 96.3 91 57.1
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 1.6e-18 96.3 91 57.1
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 2.1e-18 95.9 91 57.1
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 2.1e-18 95.9 91 57.1
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 2.8e-18 95.5 92 56.5
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 4.7e-18 94.7 91 56.0
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 4.7e-18 94.7 91 57.1
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 6.2e-18 94.4 91 58.2
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.8e-17 92.8 91 54.9
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.8e-17 92.8 91 54.9
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 2.3e-17 92.4 91 54.9
Cpa.g.sc20.227 Carica papaya HOM05D003605 ORTHO05D004292 3.1e-17 92.0 91 54.9
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 3.1e-17 92.0 91 56.0
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 3.1e-17 92.0 91 53.8
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 3.1e-17 92.0 91 54.9
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 4.0e-17 91.7 91 56.0
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 5.2e-17 91.3 91 53.8
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 5.2e-17 91.3 91 56.0
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 6.8e-17 90.9 91 54.9
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 6.8e-17 90.9 91 54.9
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 6.8e-17 90.9 91 53.8
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 6.8e-17 90.9 91 54.9
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 6.8e-17 90.9 91 53.8
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 6.8e-17 90.9 91 54.9
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 8.9e-17 90.5 91 54.9
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 8.9e-17 90.5 91 54.9
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 8.9e-17 90.5 91 53.8
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 8.9e-17 90.5 87 55.2
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 8.9e-17 90.5 91 53.8
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 8.9e-17 90.5 87 55.2
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 1.2e-16 90.1 91 53.8
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 1.2e-16 90.1 91 53.8
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 1.2e-16 90.1 91 54.9
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 1.2e-16 90.1 91 51.6
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 1.2e-16 90.1 91 53.8
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 1.5e-16 89.7 87 56.3
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.5e-16 89.7 91 54.9
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 1.5e-16 89.7 91 53.8
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.5e-16 89.7 91 53.8
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.5e-16 89.7 91 53.8
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 1.5e-16 89.7 91 53.8
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 1.5e-16 89.7 91 53.8
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 2.0e-16 89.4 91 53.8
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 2.0e-16 89.4 91 53.8
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 2.6e-16 89.0 91 52.7
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 2.6e-16 89.0 91 54.9
Oeu051794.2 Olea europaea HOM05D003605 ORTHO05D004292 2.6e-16 89.0 91 53.8
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 2.6e-16 89.0 91 53.8
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 3.4e-16 88.6 91 53.8
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 3.4e-16 88.6 91 52.7
Dinv16312 Davidia involucrata HOM05D003605 ORTHO05D004292 3.4e-16 88.6 91 51.6
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 3.4e-16 88.6 91 52.7
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 3.4e-16 88.6 91 52.7
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 4.4e-16 88.2 91 52.7
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 4.4e-16 88.2 91 52.7
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 4.4e-16 88.2 91 51.6
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 52.7
Atru.chr4.227 Acer truncatum HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 52.7
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 5.8e-16 87.8 89 53.9
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 52.7
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 51.6
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 52.7
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 50.5
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 52.7
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 5.8e-16 87.8 91 52.7
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 7.5e-16 87.4 91 53.8
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 9.8e-16 87.0 91 52.7
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 9.8e-16 87.0 91 51.6
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 9.8e-16 87.0 91 51.6
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 1.3e-15 86.7 91 51.6
Gohir.A13G028200 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.3e-15 86.7 91 52.7
Oeu032173.1 Olea europaea HOM05D003605 ORTHO05D004292 1.3e-15 86.7 124 42.7
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 1.3e-15 86.7 96 52.1
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 1.7e-15 86.3 91 51.6
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.7e-15 86.3 91 51.6
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 1.7e-15 86.3 91 52.7
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 2.2e-15 85.9 91 52.7
CSS0003079 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 2.9e-15 85.5 91 51.6
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 2.9e-15 85.5 91 53.8
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 2.9e-15 85.5 96 51.0
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 2.9e-15 85.5 91 52.7
arahy.Tifrunner.gnm1.ann1.7QDM7Z Arachis hypogaea HOM05D000001 ORTHO05D000003 3.7e-15 85.1 105 48.6
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 3.7e-15 85.1 83 55.4
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 3.7e-15 85.1 91 51.6
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 3.7e-15 85.1 91 51.6
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 3.7e-15 85.1 91 51.6
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 3.7e-15 85.1 91 51.6
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 3.7e-15 85.1 91 51.6
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 4.9e-15 84.7 91 50.5
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 4.9e-15 84.7 91 51.6
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 6.4e-15 84.3 91 51.6
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 6.4e-15 84.3 91 50.5
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 8.3e-15 84.0 91 50.5
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 8.3e-15 84.0 91 51.6
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 1.1e-14 83.6 91 50.5
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.1e-14 83.6 89 51.7
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 1.4e-14 83.2 104 48.1
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 1.9e-14 82.8 87 55.2
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 1.9e-14 82.8 91 51.6
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 2.4e-14 82.4 87 52.9
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 2.4e-14 82.4 91 48.4
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 3.2e-14 82.0 110 44.5
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 3.2e-14 82.0 110 44.5
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 3.2e-14 82.0 110 44.5
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 4.1e-14 81.6 87 52.9
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 4.1e-14 81.6 91 48.4
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 4.1e-14 81.6 91 48.4
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 4.1e-14 81.6 87 52.9
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 5.4e-14 81.3 87 51.7
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 7.0e-14 80.9 91 50.5
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 9.2e-14 80.5 87 51.7
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 9.2e-14 80.5 87 51.7
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 9.2e-14 80.5 95 47.4
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 9.2e-14 80.5 91 50.5
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 9.2e-14 80.5 91 50.5
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 9.2e-14 80.5 91 47.3
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 1.2e-13 80.1 87 54.0
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 1.6e-13 79.7 87 49.4
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.0e-13 79.3 87 49.4
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 2.0e-13 79.3 91 48.4
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 2.0e-13 79.3 91 47.3
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 2.7e-13 79.0 87 50.6
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 2.7e-13 79.0 87 49.4
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 2.7e-13 79.0 91 47.3
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 3.5e-13 78.6 91 46.2
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 4.6e-13 78.2 89 49.4
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 6.0e-13 77.8 87 49.4
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 7.8e-13 77.4 91 47.3
SEGI_19936 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 7.8e-13 77.4 91 46.2
CSS0002259 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 1.7e-12 76.3 77 54.5
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 1.7e-12 76.3 91 46.2
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 1.7e-12 76.3 91 47.3
Cre02.g147302 Chlamydomonas reinhardtii HOM05D003605 ORTHO05D004292 1.1e-11 73.6 91 44.0
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 5.6e-11 71.2 116 40.5
Lalb_Chr13g0296071 Lupinus albus HOM05D003605 ORTHO05D004292 9.5e-11 70.5 78 50.0
MCO16G531 Micromonas commoda HOM05D003605 ORTHO05D004292 1.2e-10 70.1 90 42.2
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 3.6e-10 68.6 91 42.9
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 1.8e-09 66.2 110 38.2
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 3.1e-09 65.5 90 41.1
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.2e-08 63.5 91 41.8
PRCOL_00005023 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 2.2e-07 59.3 91 40.7
AagrBONN_evm.TU.Sc2ySwM_344.2348 Anthoceros agrestis HOM05D003605 ORTHO05D004292 6.4e-07 57.8 44 59.1
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 6.4e-07 57.8 78 43.6
Nitab4.5_0002008g0010 Nicotiana tabacum HOM05D000582 ORTHO05D000456 1.4e-06 56.6 37 73.0
CAN.G763.11 Capsicum annuum HOM05D000582 ORTHO05D000456 1.9e-06 56.2 37 73.0
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 3.2e-06 55.5 78 42.3
Solyc07g007870.3 Solanum lycopersicum HOM05D000582 ORTHO05D000456 4.1e-06 55.1 37 70.3
PGSC0003DMG400030890 Solanum tuberosum HOM05D000582 ORTHO05D000456 9.2e-06 53.9 37 67.6


User provided reference genes

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