Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G824.16 Capsicum annuum HOM05D000579 ORTHO05D043474 3.1e-99 365.2 188 100.0
CAN.G1181.31 Capsicum annuum HOM05D001396 ORTHO05D000493 4.6e-26 122.1 74 81.1
Nitab4.5_0003574g0030 Nicotiana tabacum HOM05D001396 ORTHO05D000493 8.4e-20 101.3 136 44.9
Sopen02g023890 Solanum pennellii HOM05D001396 ORTHO05D000493 7.1e-19 98.2 77 63.6
CAN.G424.8 Capsicum annuum HOM05D001396 ORTHO05D000493 1.6e-18 97.1 74 68.9
Nitab4.5_0000190g0130 Nicotiana tabacum HOM05D001396 ORTHO05D000493 1.6e-18 97.1 75 66.7
PGSC0003DMG401022411 Solanum tuberosum HOM05D001396 ORTHO05D000493 2.7e-18 96.3 77 61.0
Nitab4.5_0003574g0060 Nicotiana tabacum HOM05D001396 ORTHO05D000493 3.5e-18 95.9 75 66.7
Nitab4.5_0000190g0140 Nicotiana tabacum HOM05D001396 ORTHO05D000493 6.6e-17 91.7 74 62.2
Peaxi162Scf00588g01218 Petunia axillaris HOM05D001396 ORTHO05D000493 6.6e-17 91.7 74 66.2
CAN.G424.4 Capsicum annuum HOM05D001396 ORTHO05D000493 1.5e-16 90.5 74 66.2
Solyc02g079080.2 Solanum lycopersicum HOM05D001396 ORTHO05D000493 5.6e-16 88.6 77 59.7
CAN.G424.1 Capsicum annuum HOM05D001396 ORTHO05D000493 1.4e-14 84.0 74 60.8
CAN.G424.3 Capsicum annuum HOM05D001396 ORTHO05D000493 1.2e-13 80.9 74 59.5
Solyc02g085180.5.1 Solanum lycopersicum HOM05D000579 ORTHO05D002295 3.4e-13 79.3 72 70.8
Sopen02g029880 Solanum pennellii HOM05D000579 ORTHO05D002295 3.4e-13 79.3 72 70.8
PGSC0003DMG400003509 Solanum tuberosum HOM05D000579 ORTHO05D002295 3.4e-13 79.3 53 83.0
CAN.G358.80 Capsicum annuum HOM05D000579 ORTHO05D002295 4.5e-13 79.0 72 69.4
Nitab4.5_0000178g0150 Nicotiana tabacum HOM05D000579 ORTHO05D002295 2.9e-12 76.3 72 66.7
Nitab4.5_0001960g0030 Nicotiana tabacum HOM05D000579 ORTHO05D002295 4.9e-12 75.5 95 54.7
vmacro17826 Vaccinium macrocarpon HOM05D000579 ORTHO05D002295 1.9e-11 73.6 105 48.6
Peaxi162Scf00366g00216 Petunia axillaris HOM05D000579 ORTHO05D002295 3.2e-11 72.8 87 54.0
Cc07_g09580 Coffea canephora HOM05D000579 ORTHO05D002295 2.7e-10 69.7 53 69.8
Actinidia35634 Actinidia chinensis HOM05D000579 ORTHO05D002295 3.5e-10 69.3 53 71.7
Dinv13527 Davidia involucrata HOM05D000579 ORTHO05D002295 3.5e-10 69.3 72 62.5
Oeu063200.1 Olea europaea HOM05D000579 ORTHO05D002295 3.5e-10 69.3 53 71.7
Rhsim08G0117900 Rhododendron simsii HOM05D000579 ORTHO05D002295 4.6e-10 68.9 90 53.3
RhsimUnG0099700 Rhododendron simsii HOM05D000579 ORTHO05D002295 4.6e-10 68.9 90 53.3
MSTRG.23522 Avicennia marina HOM05D000579 ORTHO05D002295 6.0e-10 68.6 87 52.9
Cfa004313 Carpinus fangiana HOM05D000579 ORTHO05D002295 7.9e-10 68.2 53 67.9
Haze_15080 Corylus avellana HOM05D000579 ORTHO05D002295 7.9e-10 68.2 53 67.9
QL06p046315 Quercus lobata HOM05D000579 ORTHO05D002295 7.9e-10 68.2 53 69.8
CAN.G424.7 Capsicum annuum HOM05D001396 ORTHO05D000493 1.0e-09 67.8 68 58.8
SEGI_36894 Sequoiadendron giganteum HOM05D000579 ORTHO05D002295 1.3e-09 67.4 95 47.4
arahy.Tifrunner.gnm1.ann1.GMVQ5Z Arachis hypogaea HOM05D000579 ORTHO05D002295 1.8e-09 67.0 53 67.9
arahy.Tifrunner.gnm1.ann1.XV2LY8 Arachis hypogaea HOM05D000579 ORTHO05D002295 6.7e-09 65.1 53 64.2
Duzib147G0691 Durio zibethinus HOM05D000579 ORTHO05D002295 6.7e-09 65.1 72 59.7
Lalb_Chr16g0377791 Lupinus albus HOM05D000579 ORTHO05D002295 8.7e-09 64.7 53 66.0
COL.COLO4_22069 Corchorus olitorius HOM05D000579 ORTHO05D002295 1.1e-08 64.3 53 66.0
HanXRQChr16g0530551 Helianthus annuus HOM05D000579 ORTHO05D002295 1.1e-08 64.3 72 56.9
Medtr8g077290 Medicago truncatula HOM05D000579 ORTHO05D002295 1.1e-08 64.3 53 66.0
Psat4g093680 Pisum sativum HOM05D000579 ORTHO05D002295 1.1e-08 64.3 53 66.0
GSVIVG01018950001 Vitis vinifera HOM05D000579 ORTHO05D002295 1.1e-08 64.3 95 48.4
Lj4A202T41 Lonicera japonica HOM05D000579 ORTHO05D002295 1.5e-08 63.9 105 45.7
Manes.01G135800 Manihot esculenta HOM05D000579 ORTHO05D002295 1.5e-08 63.9 53 64.2
Manes.02G094200 Manihot esculenta HOM05D000579 ORTHO05D002295 1.5e-08 63.9 53 64.2
TPR.G24139 Trifolium pratense HOM05D000579 ORTHO05D002295 1.9e-08 63.5 53 64.2
CANSAT01G3192 Cannabis sativa HOM05D000579 ORTHO05D002295 2.5e-08 63.2 53 60.4
Duzib264G0287 Durio zibethinus HOM05D000579 ORTHO05D002295 2.5e-08 63.2 53 66.0
Eucgr.H01277 Eucalyptus grandis HOM05D000579 ORTHO05D002295 2.5e-08 63.2 72 55.6
TWI53G1143 Tripterygium wilfordii HOM05D000579 ORTHO05D002295 2.5e-08 63.2 70 54.3
TAR376G0021 Trochodendron aralioides HOM05D000579 ORTHO05D002295 3.3e-08 62.8 53 64.2
Ah.03g140930 Amaranthus hybridus HOM05D000579 ORTHO05D002295 4.3e-08 62.4 53 66.0
Ca_22273_v3 Cicer arietinum L. HOM05D000579 ORTHO05D002295 4.3e-08 62.4 53 62.3
Ca_22287_v3 Cicer arietinum L. HOM05D000579 ORTHO05D002295 4.3e-08 62.4 53 62.3
Gohir.A11G183900 Gossypium hirsutum HOM05D000579 ORTHO05D002295 4.3e-08 62.4 53 64.2
Gohir.D11G190400 Gossypium hirsutum HOM05D000579 ORTHO05D002295 4.3e-08 62.4 53 64.2
Gorai.007G202800 Gossypium raimondii HOM05D000579 ORTHO05D002295 4.3e-08 62.4 53 64.2
Lalb_Chr09g0322351 Lupinus albus HOM05D000579 ORTHO05D002295 4.3e-08 62.4 65 58.5
Oeu063199.1 Olea europaea HOM05D000579 ORTHO05D002295 4.3e-08 62.4 72 54.2
Oeu005556.1 Olea europaea HOM05D000579 ORTHO05D002295 5.6e-08 62.0 53 62.3
Potri.007G024400 Populus trichocarpa HOM05D000579 ORTHO05D002295 5.6e-08 62.0 53 62.3
SalBow1G0015 Salvia bowleyana HOM05D000579 ORTHO05D002295 5.6e-08 62.0 53 62.3
TWI09G1058 Tripterygium wilfordii HOM05D000579 ORTHO05D002295 5.6e-08 62.0 53 60.4
Potri.005G122600 Populus trichocarpa HOM05D000579 ORTHO05D002295 7.4e-08 61.6 53 62.3
Sabra07G0021500 Salix brachista HOM05D000579 ORTHO05D002295 7.4e-08 61.6 53 60.4
DCAR_025945 Daucus carota HOM05D000579 ORTHO05D002295 9.6e-08 61.2 53 62.3
Hund13981 Selenicereus undatus HOM05D000579 ORTHO05D002295 1.3e-07 60.8 53 64.2
THA.LOC104819783 Tarenaya hassleriana HOM05D000579 ORTHO05D002295 1.3e-07 60.8 53 60.4
Thecc.01G034400 Theobroma cacao HOM05D000579 ORTHO05D002295 1.3e-07 60.8 72 56.9
CSS0023413 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D002295 1.6e-07 60.5 88 47.7
AUR62004059 Chenopodium quinoa HOM05D000579 ORTHO05D002295 1.6e-07 60.5 53 62.3
AUR62007573 Chenopodium quinoa HOM05D000579 ORTHO05D002295 1.6e-07 60.5 53 62.3
Phvul.003G254000 Phaseolus vulgaris HOM05D000579 ORTHO05D002295 1.6e-07 60.5 53 58.5
PGR102G2205 Punica granatum HOM05D000579 ORTHO05D002295 1.6e-07 60.5 53 58.5
SEGI_13094 Sequoiadendron giganteum HOM05D000579 ORTHO05D002295 1.6e-07 60.5 71 50.7
Thhalv10025766m.g Eutrema salsugineum HOM05D000579 ORTHO05D002295 2.1e-07 60.1 53 60.4
Hma1.2p1_0144F.1_g064650 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 2.1e-07 60.1 74 47.3
LjContig00448g0014280 Lotus japonicus HOM05D000579 ORTHO05D002295 2.1e-07 60.1 95 46.3
Sc07g0000390 Simmondsia chinensis HOM05D000579 ORTHO05D002295 2.1e-07 60.1 87 49.4
EL10Ac6g15555 Beta vulgaris HOM05D000579 ORTHO05D002295 3.7e-07 59.3 48 68.8
A01p02290 Brassica napus HOM05D000579 ORTHO05D002295 3.7e-07 59.3 53 60.4
C01p02500 Brassica napus HOM05D000579 ORTHO05D002295 3.7e-07 59.3 53 60.4
BolC1t00238H Brassica oleracea HOM05D000579 ORTHO05D002295 3.7e-07 59.3 53 60.4
BraA01t00217Z Brassica rapa HOM05D000579 ORTHO05D002295 3.7e-07 59.3 53 60.4
Nn1g04971 Nelumbo nucifera HOM05D000579 ORTHO05D002295 3.7e-07 59.3 53 62.3
CARHR244950 Cardamine hirsuta HOM05D000579 ORTHO05D002295 4.8e-07 58.9 53 58.5
PSO541G0571 Papaver somniferum HOM05D000579 ORTHO05D002295 4.8e-07 58.9 95 43.2
PSO675G0295 Papaver somniferum HOM05D000579 ORTHO05D002295 4.8e-07 58.9 65 53.8
BcaNung00718 Brassica carinata HOM05D000579 ORTHO05D002295 6.2e-07 58.5 53 58.5
BcaNung04423 Brassica carinata HOM05D000579 ORTHO05D002295 6.2e-07 58.5 53 58.5
QL06p046333 Quercus lobata HOM05D000579 ORTHO05D002295 6.2e-07 58.5 53 58.5
Sp7g34260 Schrenkiella parvula HOM05D000579 ORTHO05D002295 6.2e-07 58.5 53 58.5
Ciclev10026099m.g Citrus clementina HOM05D000579 ORTHO05D002295 8.1e-07 58.2 53 60.4
QL04p018347 Quercus lobata HOM05D001396 ORTHO05D000493 8.1e-07 58.2 86 41.9
VMungo0251G2337 Vigna mungo HOM05D000579 ORTHO05D002295 8.1e-07 58.2 53 54.7
ClCG07G008570 Citrullus lanatus HOM05D000579 ORTHO05D002295 1.1e-06 57.8 53 60.4
Glyma.02G056400 Glycine max HOM05D000579 ORTHO05D002295 1.1e-06 57.8 53 56.6
Lsat_1_v5_gn_3_76540 Lactuca sativa HOM05D000579 ORTHO05D002295 1.1e-06 57.8 72 51.4
MBI10_g41094_MAGBIO Magnolia biondii HOM05D000579 ORTHO05D002295 1.1e-06 57.8 51 62.7
Peaxi162Scf00588g01217 Petunia axillaris HOM05D001396 ORTHO05D043474 1.1e-06 57.8 49 61.2
CiPaw.01G040000 Carya illinoinensis HOM05D000579 ORTHO05D002295 1.4e-06 57.4 53 56.6
Aa31LG6G13410 Aethionema arabicum HOM05D000579 ORTHO05D002295 1.8e-06 57.0 53 56.6
ECA246G3518 Erigeron canadensis HOM05D000579 ORTHO05D002295 1.8e-06 57.0 53 54.7
FvH4_1g13200 Fragaria vesca HOM05D000579 ORTHO05D002295 1.8e-06 57.0 53 60.4
FAN19G3105 Fragaria x ananassa HOM05D003046 ORTHO05D002295 1.8e-06 57.0 53 60.4
FAN26G1465 Fragaria x ananassa HOM05D000579 ORTHO05D002295 1.8e-06 57.0 53 60.4
MD15G1260700 Malus domestica HOM05D000579 ORTHO05D002295 1.8e-06 57.0 95 44.2
RcHm_v2.0_Chr2g0101411 Rosa chinensis HOM05D000579 ORTHO05D002295 1.8e-06 57.0 70 52.9
Aqoxy5G01613 Aquilegia oxysepala HOM05D000579 ORTHO05D002295 2.4e-06 56.6 53 58.5
CiPaw.01G039800 Carya illinoinensis HOM05D000579 ORTHO05D002295 2.4e-06 56.6 53 56.6
Sed0010797 Sechium edule HOM05D000579 ORTHO05D002295 2.4e-06 56.6 53 62.3
CsaV3_4G005590 Cucumis sativus L. HOM05D000579 ORTHO05D002295 3.1e-06 56.2 65 52.3
Dinv40489 Davidia involucrata HOM05D001396 ORTHO05D000493 3.1e-06 56.2 149 28.9
HPP92_023411 Vanilla planifolia HOM05D000579 ORTHO05D002295 3.1e-06 56.2 53 56.6
AL3G51630 Arabidopsis lyrata HOM05D000579 ORTHO05D002295 4.0e-06 55.8 53 54.7
AT2G18360 Arabidopsis thaliana HOM05D000579 ORTHO05D002295 4.0e-06 55.8 53 54.7
MELO3C016390.2 Cucumis melo HOM05D000579 ORTHO05D002295 4.0e-06 55.8 53 58.5
Lalb_Chr09g0322331 Lupinus albus HOM05D000579 ORTHO05D002295 4.0e-06 55.8 64 50.0
ATR0568G123 Amborella trichopoda HOM05D000579 ORTHO05D002295 5.3e-06 55.5 53 56.6
FAN23G0384 Fragaria x ananassa HOM05D000579 ORTHO05D002295 5.3e-06 55.5 53 58.5
FAN28G0663 Fragaria x ananassa HOM05D003046 ORTHO05D002295 5.3e-06 55.5 53 58.5
FAN28G0674 Fragaria x ananassa HOM05D003046 ORTHO05D002295 5.3e-06 55.5 53 58.5
Carub.0003s3251 Capsella rubella HOM05D000579 ORTHO05D002295 6.9e-06 55.1 53 54.7
Thhalv10023049m.g Eutrema salsugineum HOM05D000579 ORTHO05D002295 6.9e-06 55.1 53 54.7


User provided reference genes

Program Settings