Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 0.0e+00 1229.2 730 100.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.0e-286 989.9 799 77.0
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 5.3e-280 967.6 760 79.3
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.0e-264 914.1 785 72.6
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 3.7e-249 865.1 775 71.9
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 1.3e-196 690.6 797 54.5
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.4e-186 656.0 797 55.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.8e-182 643.7 795 52.6
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 3.8e-177 625.9 797 51.6
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.4e-176 624.0 797 51.3
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 3.4e-170 602.8 780 50.5
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.3e-145 521.2 567 59.1
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.4e-133 479.9 767 47.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 6.1e-127 459.1 825 43.8
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.4e-125 453.4 783 42.9
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 5.6e-120 436.0 809 43.1
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 1.2e-119 434.9 757 45.6
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 3.4e-117 426.8 786 43.8
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.1e-115 421.8 802 41.6
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 9.2e-115 418.7 788 48.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 4.6e-114 416.4 630 50.6
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.3e-113 414.8 785 42.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.3e-113 414.1 803 46.9
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.1e-113 412.9 782 41.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.3e-112 409.1 772 42.7
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.1e-110 405.2 597 53.8
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 8.9e-110 402.1 777 41.7
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.6e-109 400.6 782 42.5
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.2e-108 397.5 771 46.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.3e-108 395.6 775 44.1
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 4.1e-107 393.3 769 41.2
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.6e-106 391.3 823 40.9
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.6e-106 391.3 777 39.4
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.3e-105 388.3 819 39.8
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 7.3e-104 382.5 827 44.9
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 9.5e-104 382.1 440 54.5
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 3.6e-103 380.2 797 42.9
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.2e-103 379.4 817 39.4
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 8.1e-103 379.0 761 45.9
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.2e-102 376.3 791 41.2
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 8.9e-102 375.6 770 40.4
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.2e-101 375.2 797 45.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 3.4e-101 373.6 799 38.7
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.9e-101 372.1 778 42.7
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.3e-100 371.7 793 40.5
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-100 371.3 772 41.6
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.7e-100 371.3 788 45.9
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-99 368.2 767 40.2
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.2e-99 367.1 767 40.0
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.6e-98 364.8 773 39.7
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 6.0e-98 362.8 802 44.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.0e-97 362.1 796 38.4
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.7e-97 361.3 753 45.2
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.3e-97 360.9 399 61.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.9e-97 360.1 768 39.5
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.1e-96 358.6 482 47.7
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.5e-96 357.5 817 44.7
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.5e-96 357.5 798 38.5
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 4.3e-96 356.7 827 36.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 5.6e-96 356.3 824 40.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.6e-96 356.3 765 45.8
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 8.1e-95 352.4 839 44.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 6.9e-94 349.4 827 38.9
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 9.0e-94 349.0 591 50.9
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.2e-93 348.6 795 37.4
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-93 348.6 803 37.6
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-93 348.2 764 38.9
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 2.6e-93 347.4 839 43.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 7.6e-93 345.9 801 36.8
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 3.8e-92 343.6 799 40.9
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.4e-91 339.7 789 37.3
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 4.6e-90 336.7 711 39.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.7e-89 334.7 839 40.6
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.9e-89 333.6 431 50.3
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.9e-89 333.6 871 35.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 6.6e-89 332.8 796 43.1
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.1e-88 332.0 785 38.9
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.6e-88 329.7 801 40.1
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.6e-88 329.7 771 44.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 9.6e-88 328.9 462 59.1
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 9.6e-88 328.9 796 39.1
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 9.6e-88 328.9 839 42.0
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 9.6e-88 328.9 809 37.0
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.1e-86 323.9 801 37.6
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 6.9e-86 322.8 791 36.8
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 9.0e-86 322.4 755 42.3
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.5e-85 321.6 828 41.9
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 3.4e-85 320.5 581 50.6
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 3.4e-85 320.5 657 44.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 4.5e-85 320.1 809 42.8
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.3e-84 318.5 783 42.8
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 2.2e-84 317.8 811 36.0
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.9e-83 314.7 795 38.1
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.4e-83 314.3 489 48.9
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.6e-82 311.6 766 41.6
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 6.0e-82 309.7 494 48.0
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.0e-81 307.4 776 36.1
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 8.7e-81 305.8 764 39.3
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 8.7e-81 305.8 731 35.7
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 3.3e-80 303.9 758 41.3
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 4.3e-80 303.5 805 35.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 5.6e-80 303.1 759 36.6
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 3.1e-78 297.4 493 50.5
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 5.3e-78 296.6 812 40.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.5e-77 293.5 808 34.7
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 5.8e-77 293.1 795 39.4
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 7.6e-77 292.7 745 39.2
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 7.6e-77 292.7 493 49.7
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.7e-76 291.6 595 48.1
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 6.4e-76 289.7 758 38.7
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.1e-75 288.9 758 40.4
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 4.2e-75 287.0 734 40.2
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.2e-74 285.4 813 39.4
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.6e-74 285.0 759 36.4
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 6.0e-74 283.1 759 38.1
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-73 282.3 756 42.3
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.0e-73 280.8 761 37.7
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 6.7e-73 279.6 830 40.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.5e-72 278.5 459 48.8
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.5e-72 277.7 765 40.7
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 9.6e-72 275.8 481 50.7
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.6e-71 275.0 735 37.6
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.6e-71 275.0 759 41.6
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.4e-70 271.2 980 30.8
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 4.5e-69 266.9 779 36.5
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-66 258.8 526 45.6
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.3e-65 255.4 293 53.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.5e-64 251.1 547 43.3
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 2.4e-62 244.6 768 38.0
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 3.8e-60 237.3 346 52.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.6e-58 230.7 818 37.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 4.6e-58 230.3 526 41.1
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 8.8e-49 199.5 662 36.9
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 9.1e-46 189.5 542 34.3
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 5.0e-44 183.7 384 50.5
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 4.2e-43 180.6 163 63.2
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.5e-43 180.3 329 48.3
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 2.6e-37 161.4 632 31.5
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.9e-37 160.2 765 29.0
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 3.2e-35 154.5 110 74.5
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 8.3e-31 139.8 412 31.8
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 3.5e-29 134.4 100 73.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.5e-29 134.4 425 30.1
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-28 132.5 422 28.7
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.5e-27 129.0 414 30.7
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 9.4e-27 126.3 522 30.3
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 4.0e-25 120.9 134 56.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 8.8e-25 119.8 603 29.5
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.8e-23 114.8 89 68.5
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 8.3e-23 113.2 169 45.6
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.8e-22 112.1 168 44.0
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.5e-19 100.5 68 80.9
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.0e-17 94.7 66 77.3
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 4.0e-17 94.4 59 78.0
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.2e-16 92.8 403 27.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.2e-14 84.7 79 57.0
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 4.6e-13 80.9 52 75.0
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.6e-12 77.0 470 26.8
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-11 75.5 49 79.6
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.6e-11 73.9 49 77.6
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 2.1e-10 72.0 454 26.2
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.0e-09 69.7 76 51.3
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 8.9e-09 66.6 47 70.2
Peaxi162Scf00546g00526 Petunia axillaris HOM05D011732 ORTHO05D007063 1.5e-08 65.9 52 71.2
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-07 62.0 38 78.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-07 61.2 38 76.3
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.9e-07 60.8 39 74.4
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.4e-07 60.5 38 76.3
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-06 59.7 38 73.7
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.4e-06 59.3 36 80.6
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-06 58.5 36 77.8
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 2.4e-06 58.5 36 77.8
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 2.4e-06 58.5 36 77.8
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-06 58.2 38 71.1
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.2e-06 58.2 46 63.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.4e-06 57.4 36 77.8
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.0e-06 57.0 36 77.8
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 9.2e-06 56.6 87 37.9


User provided reference genes

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