Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 7.3e-141 503.8 246 100.0
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 2.8e-124 448.7 251 87.6
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 1.9e-120 436.0 227 91.2
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 9.3e-120 433.7 253 83.8
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.0e-118 430.3 250 83.2
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.0e-118 430.3 227 89.9
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 6.5e-113 411.0 245 82.4
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 4.1e-107 391.7 228 78.9
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 5.3e-107 391.3 249 75.5
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.5e-106 389.8 244 75.8
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 3.4e-106 388.7 228 78.5
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 2.9e-105 385.6 247 74.9
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 8.5e-105 384.0 247 76.1
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 8.5e-105 384.0 239 75.7
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 8.5e-105 384.0 243 74.5
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 2.5e-104 382.5 251 74.1
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 3.2e-104 382.1 221 80.5
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 1.2e-103 380.2 241 75.5
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.6e-103 379.8 219 79.9
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 2.1e-103 379.4 245 75.5
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 1.8e-102 376.3 246 72.8
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 3.0e-102 375.6 235 75.3
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 3.9e-102 375.2 223 77.1
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 8.8e-102 374.0 251 70.9
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 3.3e-101 372.1 251 69.3
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 4.3e-101 371.7 251 69.3
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 1.3e-100 370.2 253 69.2
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 1.7e-100 369.8 240 72.1
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 2.2e-100 369.4 214 79.4
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 2.2e-100 369.4 248 70.6
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 2.8e-100 369.0 251 68.9
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 3.7e-100 368.6 240 71.7
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 6.3e-100 367.9 246 70.7
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.4e-99 366.7 242 71.1
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.4e-99 366.7 240 71.2
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.8e-99 366.3 245 70.2
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.4e-99 365.9 196 84.2
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 3.1e-99 365.5 232 72.0
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 4.1e-99 365.2 244 69.7
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 4.1e-99 365.2 215 76.7
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 5.3e-99 364.8 245 70.2
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 6.9e-99 364.4 242 70.7
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 6.9e-99 364.4 240 70.4
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 9.1e-99 364.0 240 70.4
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 1.5e-98 363.2 241 71.4
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 3.4e-98 362.1 250 70.0
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 3.4e-98 362.1 220 74.5
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 1.3e-97 360.1 244 70.9
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 2.9e-97 359.0 252 69.4
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.9e-96 356.3 240 68.3
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.9e-96 356.3 258 66.7
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 9.4e-96 354.0 228 72.4
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 9.4e-96 354.0 240 70.0
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.2e-95 353.6 274 63.1
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 2.7e-95 352.4 244 68.4
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 3.6e-95 352.1 243 67.9
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 1.4e-94 350.1 243 67.1
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 1.4e-94 350.1 224 71.4
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 1.8e-94 349.7 243 67.5
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 3.0e-94 349.0 243 67.1
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 6.7e-94 347.8 216 72.7
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 8.8e-94 347.4 230 71.3
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 1.1e-93 347.1 243 67.1
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 2.0e-93 346.3 243 68.3
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 5.7e-93 344.7 243 67.5
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 9.7e-93 344.0 216 72.2
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 1.3e-92 343.6 246 66.7
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 1.3e-92 343.6 226 69.0
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 1.7e-92 343.2 219 71.2
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 2.2e-92 342.8 238 66.8
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 2.2e-92 342.8 239 66.9
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 3.7e-92 342.0 215 71.6
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 4.8e-92 341.7 235 66.8
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 6.3e-92 341.3 216 70.8
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 6.3e-92 341.3 246 65.9
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 6.3e-92 341.3 242 67.4
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 8.2e-92 340.9 220 71.8
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 1.4e-91 340.1 243 65.8
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 2.4e-91 339.3 246 66.3
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 5.3e-91 338.2 247 65.2
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 5.3e-91 338.2 216 70.8
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 5.3e-91 338.2 209 71.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 7.0e-91 337.8 224 68.3
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 7.0e-91 337.8 217 70.5
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 7.0e-91 337.8 233 66.5
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 9.1e-91 337.4 246 65.0
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 9.1e-91 337.4 237 67.5
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 1.2e-90 337.0 233 66.5
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 1.6e-90 336.7 242 64.9
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 2.0e-90 336.3 232 66.4
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 2.6e-90 335.9 271 62.4
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 3.5e-90 335.5 330 53.3
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 4.5e-90 335.1 246 65.4
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 5.9e-90 334.7 239 64.9
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 2.9e-89 332.4 242 64.5
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.0e-86 323.9 220 71.4
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 3.1e-83 312.4 220 63.6
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 2.5e-80 302.8 194 73.2
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 2.5e-80 302.8 200 69.0
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 3.2e-80 302.4 207 69.1
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 3.0e-78 295.8 205 68.3
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 3.4e-77 292.4 180 75.6
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 4.7e-71 271.9 232 58.2
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.7e-68 263.5 223 56.1
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 7.0e-67 258.1 162 71.6
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 1.7e-65 253.4 215 55.8
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 1.9e-56 223.4 139 74.8
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 1.0e-54 217.6 245 49.0
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 4.7e-47 192.2 101 83.2
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 1.1e-43 181.0 227 43.6
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.4e-43 180.6 212 44.8
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 2.4e-43 179.9 131 64.1
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 1.3e-41 174.1 208 47.6
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 2.4e-35 153.3 213 39.4
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 1.7e-33 147.1 103 64.1
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.7e-33 147.1 93 72.0
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 7.3e-32 141.7 94 69.1
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 7.3e-32 141.7 94 69.1
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.6e-31 140.6 107 61.7
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 8.1e-31 138.3 120 57.5
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 4.9e-28 129.0 149 48.3
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 4.9e-28 129.0 149 48.3
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-26 124.4 95 64.2
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 3.5e-26 122.9 96 62.5
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.4e-22 110.2 60 81.7
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 2.4e-22 110.2 84 61.9
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 6.9e-22 108.6 74 67.6
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 2.6e-21 106.7 194 37.1
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 3.9e-17 92.8 52 78.8
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.1e-16 91.3 171 33.3
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 6.9e-14 82.0 48 77.1
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 1.6e-10 70.9 72 52.8


User provided reference genes

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