Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 3.9e-70 268.1 142 100.0
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.7e-60 235.0 141 87.2
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 2.2e-57 225.7 145 85.5
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 6.5e-57 224.2 145 84.8
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.5e-53 212.2 141 81.6
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.4e-43 179.9 119 82.4
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.2e-42 176.8 134 66.4
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 5.9e-42 174.5 144 63.9
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 3.8e-41 171.8 141 66.0
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 6.5e-41 171.0 152 63.8
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 5.5e-40 167.9 144 61.1
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 7.2e-40 167.5 144 63.2
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 9.4e-40 167.2 95 91.6
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.1e-39 166.0 144 62.5
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 4.7e-39 164.9 144 62.5
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.0e-38 163.7 146 63.7
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 3.0e-38 162.2 142 64.1
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 3.9e-38 161.8 142 64.1
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.2e-38 161.4 140 65.0
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.1e-37 160.2 143 60.1
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 3.3e-37 158.7 143 61.5
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 9.7e-37 157.1 140 62.1
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 9.7e-37 157.1 142 60.6
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 1.3e-36 156.8 143 60.1
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 3.7e-36 155.2 143 60.1
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 3.7e-36 155.2 145 60.0
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 6.3e-36 154.5 140 60.0
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 6.3e-36 154.5 142 58.5
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 1.1e-35 153.7 143 60.8
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 3.1e-35 152.1 147 57.1
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 4.1e-35 151.8 133 63.9
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 5.3e-35 151.4 146 60.3
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 7.0e-35 151.0 148 56.8
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.2e-34 150.2 143 57.3
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.6e-34 149.8 143 58.7
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 1.6e-34 149.8 139 60.4
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 2.0e-34 149.4 133 60.2
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 3.5e-34 148.7 149 61.1
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 7.7e-34 147.5 141 57.4
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 7.7e-34 147.5 167 53.9
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.3e-33 146.7 142 57.7
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.3e-33 146.7 128 62.5
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 1.7e-33 146.4 140 60.0
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 2.9e-33 145.6 140 57.9
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 2.9e-33 145.6 139 62.6
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 5.0e-33 144.8 142 55.6
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 1.1e-32 143.7 151 57.6
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 3.2e-32 142.1 138 58.0
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 4.2e-32 141.7 137 56.2
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 5.5e-32 141.4 168 51.8
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 9.4e-32 140.6 147 55.8
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.2e-31 140.2 168 51.2
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.7e-31 139.0 141 57.4
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 2.7e-31 139.0 131 59.5
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 2.7e-31 139.0 138 56.5
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 4.7e-31 138.3 142 54.9
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 6.1e-31 137.9 141 58.9
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 8.0e-31 137.5 142 51.4
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.8e-30 136.3 138 55.8
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 3.0e-30 135.6 138 56.5
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 4.0e-30 135.2 134 56.0
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 1.2e-29 133.7 132 58.3
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.5e-29 133.3 138 55.1
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 3.3e-29 132.1 144 53.5
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 4.4e-29 131.7 142 52.1
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 4.4e-29 131.7 141 55.3
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 5.7e-29 131.3 142 52.8
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 5.7e-29 131.3 141 53.2
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 5.7e-29 131.3 141 53.9
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 7.5e-29 131.0 139 56.8
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 2.8e-28 129.0 139 53.2
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 3.7e-28 128.6 140 54.3
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 3.7e-28 128.6 137 54.0
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 1.8e-27 126.3 141 56.0
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 4.1e-27 125.2 137 51.1
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 4.1e-27 125.2 101 67.3
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.7e-26 122.5 89 70.8
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 5.9e-26 121.3 121 53.7
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 5.9e-26 121.3 126 54.0
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 1.3e-25 120.2 89 68.5
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 2.2e-25 119.4 119 58.8
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 5.0e-25 118.2 134 50.7
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.1e-24 117.1 130 52.3
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.5e-24 116.7 138 51.4
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.5e-24 116.7 117 55.6
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.9e-24 116.3 114 58.8
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.9e-24 116.3 117 54.7
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 4.2e-24 115.2 119 54.6
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.6e-23 113.2 144 47.9
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.6e-23 113.2 88 65.9
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 2.1e-23 112.8 131 53.4
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 2.7e-23 112.5 88 65.9
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 3.6e-23 112.1 89 66.3
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.0e-22 110.5 141 51.1
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.0e-22 110.5 144 50.7
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 1.0e-22 110.5 77 72.7
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 1.0e-22 110.5 153 45.1
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 1.4e-22 110.2 141 51.1
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.3e-22 109.4 77 70.1
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 2.3e-22 109.4 89 64.0
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 3.0e-22 109.0 141 50.4
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 4.0e-22 108.6 141 50.4
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 6.8e-22 107.8 135 53.3
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 4.4e-21 105.1 124 51.6
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 4.4e-21 105.1 90 62.2
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 7.5e-21 104.4 119 50.4
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 2.8e-20 102.4 109 55.0
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 8.3e-20 100.9 126 50.8
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.0e-17 94.0 137 40.9
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 1.9e-16 89.7 70 62.9
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 9.5e-16 87.4 119 47.1
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 9.5e-16 87.4 89 60.7
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 4.7e-15 85.1 89 59.6
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 3.0e-14 82.4 141 41.1
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 5.2e-14 81.6 88 58.0
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.7e-12 76.6 142 41.5
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.1e-11 72.4 143 35.7
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.5e-10 68.9 136 36.0
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 5.9e-10 68.2 85 45.9
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-09 67.0 83 48.2
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.3e-09 67.0 72 56.9
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 2.9e-09 65.9 83 48.2
Nitab4.5_0001041g0050 Nicotiana tabacum HOM05D006603 ORTHO05D007786 6.6e-09 64.7 36 88.9
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 2.5e-08 62.8 140 36.4
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 4.3e-08 62.0 140 33.6
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.6e-07 60.1 149 32.9
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 2.1e-07 59.7 144 34.0
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 8.0e-07 57.8 138 34.8
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 8.0e-07 57.8 141 29.8
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 8.0e-07 57.8 141 33.3
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.4e-06 57.0 139 32.4
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 1.8e-06 56.6 63 50.8
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 1.8e-06 56.6 74 51.4
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 2.3e-06 56.2 138 30.4
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 3.0e-06 55.8 134 31.3
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 3.0e-06 55.8 135 32.6
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 5.2e-06 55.1 140 31.4
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 5.2e-06 55.1 135 31.1
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 6.8e-06 54.7 107 41.1
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 6.8e-06 54.7 135 33.3


User provided reference genes

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