Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 0.0e+00 1179.1 670 100.0
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.0e-274 948.0 685 81.0
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 3.8e-264 914.8 693 80.4
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.9e-264 914.4 696 80.7
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.5e-241 838.2 695 75.5
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.5e-241 838.2 692 75.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 7.7e-217 757.7 708 69.5
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.0e-140 503.8 761 53.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.3e-136 491.1 736 54.3
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 3.0e-128 463.4 766 53.1
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.0e-128 463.4 729 49.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-125 453.4 725 48.8
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.0e-123 448.4 263 90.9
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 8.7e-120 435.3 771 50.3
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.2e-114 416.8 718 51.4
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.6e-113 414.5 756 46.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.3e-111 406.8 639 47.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 4.3e-111 406.4 759 48.6
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.6e-110 404.4 689 46.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.8e-110 403.7 712 51.4
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.4e-109 401.4 790 45.6
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 4.1e-109 399.8 795 47.4
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 5.3e-109 399.4 762 47.9
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.9e-108 396.0 697 45.6
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 6.1e-105 386.0 679 48.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.4e-104 384.8 713 49.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.1e-103 381.7 772 46.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.0e-103 380.9 694 48.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.5e-103 380.6 771 47.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.8e-102 376.3 767 45.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.1e-101 373.2 723 44.4
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 6.9e-101 372.5 729 44.4
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.0e-100 370.9 760 45.1
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.5e-99 365.5 777 45.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 8.5e-99 365.5 681 43.5
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.2e-98 363.6 680 48.2
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 7.2e-98 362.5 772 46.4
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.6e-97 361.3 675 46.2
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.1e-97 360.9 714 47.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.5e-95 354.8 778 41.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.5e-95 354.8 766 46.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.6e-95 354.0 684 48.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.4e-95 353.2 780 45.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.7e-95 352.1 707 44.3
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.8e-94 350.5 755 44.5
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.1e-93 348.6 686 44.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.4e-93 348.2 679 48.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.1e-93 346.7 777 42.2
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 2.5e-90 337.4 783 41.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 9.4e-90 335.5 720 43.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.7e-89 333.2 768 44.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.8e-88 331.3 689 46.9
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 6.7e-88 329.3 778 42.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 8.8e-88 328.9 788 40.5
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-87 328.6 773 45.5
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.0e-87 327.8 764 44.5
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.3e-87 327.0 771 43.6
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.3e-87 327.0 752 43.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 9.7e-87 325.5 716 43.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.3e-86 325.1 738 41.9
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.7e-86 324.7 698 40.8
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 8.2e-86 322.4 747 44.7
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.1e-85 322.0 767 42.1
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.0e-85 319.3 776 39.7
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 9.1e-85 318.9 793 42.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.2e-84 318.5 774 43.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.8e-83 313.5 744 40.5
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.8e-83 313.5 744 40.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.0e-83 313.2 744 40.6
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 8.5e-83 312.4 789 42.6
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.2e-82 310.5 741 39.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.2e-82 310.5 744 38.8
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 5.5e-82 309.7 703 45.7
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.6e-79 300.8 733 44.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 5.4e-77 293.1 716 42.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 7.0e-77 292.7 187 80.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 5.9e-76 289.7 588 42.5
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.7e-75 288.1 713 41.2
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-75 287.7 663 41.8
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.1e-74 285.4 681 40.8
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.5e-74 285.0 687 44.3
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 7.2e-74 282.7 791 41.5
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.1e-73 281.2 662 39.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.0e-72 277.3 623 41.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.0e-72 276.9 759 39.1
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.0e-72 276.9 687 43.8
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-71 275.4 652 40.5
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.6e-71 274.2 642 41.1
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.6e-71 274.2 631 43.6
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 4.4e-71 273.5 760 42.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 9.8e-71 272.3 688 40.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.4e-69 268.5 773 35.8
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.5e-68 263.5 738 38.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.5e-68 263.5 701 39.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 7.3e-66 256.1 678 37.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 9.5e-66 255.8 742 37.3
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.6e-65 255.0 673 39.7
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 6.1e-65 253.1 762 40.7
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.3e-62 245.4 466 43.3
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.3e-58 230.3 781 33.8
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 7.3e-58 229.6 684 34.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.6e-57 227.3 637 37.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.2e-56 223.4 742 38.9
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.8e-55 219.9 687 38.7
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 5.8e-55 219.9 754 35.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 9.8e-55 219.2 754 38.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.4e-53 214.5 692 40.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 9.2e-53 212.6 341 46.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.0e-52 211.5 769 38.5
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.7e-52 211.1 610 36.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.0e-52 209.9 753 37.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.3e-51 208.8 613 39.8
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.3e-51 208.8 652 36.0
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.7e-51 208.4 385 54.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.6e-51 206.5 584 40.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.4e-48 198.7 750 38.4
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.1e-48 197.6 584 39.4
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.0e-48 197.2 591 39.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.6e-47 194.5 622 34.9
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.3e-46 192.2 420 50.0
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.4e-46 189.9 229 53.3
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.1e-45 189.1 606 35.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-45 188.7 675 38.1
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.4e-45 186.8 759 34.8
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 5.4e-45 186.8 744 37.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.1e-45 186.4 736 38.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 9.2e-45 186.0 608 37.7
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.6e-44 185.3 659 39.2
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.5e-44 184.1 732 33.6
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 4.3e-42 177.2 683 37.8
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.8e-41 174.5 403 39.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.6e-41 174.1 750 37.9
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.3e-40 171.4 492 38.0
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.4e-39 167.5 698 36.5
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 4.4e-39 167.2 627 33.5
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 6.4e-38 163.3 574 32.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.2e-37 161.0 685 31.4
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 6.0e-36 156.8 761 30.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 5.1e-35 153.7 629 33.4
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 6.6e-35 153.3 314 42.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.5e-34 151.4 405 37.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.2e-31 142.5 155 55.5
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.8e-30 137.5 336 36.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.9e-30 137.1 707 28.4
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.4e-29 134.8 761 28.1
Peaxi162Scf00559g00031 Petunia axillaris HOM05D003795 ORTHO05D004308 2.1e-28 131.7 612 29.4
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 4.6e-28 130.6 239 44.4
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 7.8e-28 129.8 527 31.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 5.1e-27 127.1 494 34.6
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.1e-24 119.4 530 34.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-24 119.4 530 34.0
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-24 118.2 426 41.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 3.1e-24 117.9 593 36.6
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.6e-23 114.8 534 30.1
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.6e-20 105.5 107 57.9
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 3.0e-19 101.3 494 35.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.1e-19 100.5 590 27.8
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 5.1e-19 100.5 395 38.5
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 7.4e-18 96.7 133 48.1
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-17 95.9 287 33.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.8e-17 94.7 249 37.8
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 3.6e-17 94.4 313 40.9
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.1e-16 91.3 219 42.5
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 3.2e-13 81.3 131 48.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 3.2e-13 81.3 142 45.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.0e-11 74.7 97 48.5
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.3e-09 69.3 93 46.2
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.8e-09 67.4 204 33.3
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.4e-08 65.9 110 43.6
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 9.0e-08 63.2 64 62.5
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.8e-07 60.5 58 60.3
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 8.4e-06 56.6 105 48.6


User provided reference genes

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