Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 9.4e-162 573.5 307 100.0
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.2e-156 556.6 304 97.4
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.2e-156 556.6 304 97.4
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.2e-156 556.6 304 97.4
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.0e-155 551.2 304 96.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.5e-155 550.8 304 96.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.7e-153 545.4 304 96.1
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 2.6e-127 459.1 304 79.3
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.0e-124 449.5 304 78.9
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.3e-123 446.8 305 76.7
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 6.6e-123 444.5 304 76.3
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.9e-122 443.0 301 77.7
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.5e-122 442.6 304 76.3
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 3.3e-122 442.2 304 76.0
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 8.1e-121 437.6 304 75.3
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.4e-120 436.8 304 75.3
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 8.9e-120 434.1 304 75.7
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.5e-119 433.3 304 74.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.7e-118 429.9 304 73.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.7e-118 429.9 304 74.3
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.2e-118 429.5 304 73.4
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.9e-118 429.1 297 75.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.9e-118 428.3 304 74.3
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 73.4
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 7.1e-117 424.5 304 72.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 9.2e-117 424.1 281 78.6
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 9.2e-117 424.1 303 72.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 9.2e-117 424.1 303 72.9
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.2e-116 423.7 300 74.0
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.6e-116 423.3 301 72.4
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 3.5e-116 422.2 305 73.4
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 4.6e-116 421.8 304 72.7
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 3.9e-115 418.7 299 74.9
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 6.6e-115 417.9 295 75.3
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.5e-114 416.8 304 71.7
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.5e-114 416.8 304 71.7
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.9e-114 416.4 294 74.8
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.9e-114 416.4 304 72.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.9e-114 416.4 304 72.0
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.5e-114 416.0 291 77.3
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 7.3e-114 414.5 304 72.0
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 7.3e-114 414.5 304 70.7
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 9.5e-114 414.1 297 72.4
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.6e-113 413.3 281 77.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 1.6e-113 413.3 305 71.5
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 3.6e-113 412.1 294 73.5
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 4.7e-113 411.8 298 74.2
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 6.2e-113 411.4 304 71.4
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 8.1e-113 411.0 304 73.4
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.1e-112 410.6 290 74.5
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 2.3e-112 409.5 293 73.7
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 4.0e-112 408.7 304 71.7
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.5e-111 406.8 297 71.7
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.5e-111 406.8 296 72.6
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 2.6e-111 406.0 295 72.9
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.6e-111 406.0 305 70.8
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.4e-111 405.6 304 70.1
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 3.4e-111 405.6 297 71.7
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.4e-111 405.6 296 72.3
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.4e-111 405.2 304 70.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 5.8e-111 404.8 296 73.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 9.9e-111 404.1 305 71.8
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.7e-110 402.1 304 69.7
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.4e-109 400.2 305 70.2
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 2.4e-109 399.4 304 69.7
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 2.4e-109 399.4 305 70.2
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-109 399.1 293 72.7
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 3.2e-109 399.1 305 71.5
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.4e-109 398.3 304 70.1
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.2e-108 397.1 304 69.7
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.2e-108 397.1 293 72.4
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.2e-108 397.1 296 69.9
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 7.8e-108 394.4 305 69.8
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.3e-107 393.7 304 68.1
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.7e-107 393.3 305 70.5
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 3.0e-107 392.5 305 69.5
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.9e-106 389.8 304 69.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 3.3e-106 389.0 298 69.8
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 5.6e-106 388.3 301 68.8
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 7.3e-106 387.9 304 67.8
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.8e-105 386.0 304 67.8
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 4.7e-105 385.2 304 67.8
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 4.7e-105 385.2 304 67.4
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 2.0e-103 379.8 295 67.8
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.0e-103 379.8 300 67.0
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 2.6e-103 379.4 308 66.6
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 2.6e-103 379.4 315 64.8
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 3.4e-103 379.0 296 69.3
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 4.4e-103 378.6 310 66.1
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.8e-103 378.3 309 66.0
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.4e-101 372.9 306 66.3
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.4e-101 372.9 281 71.9
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 4.2e-101 372.1 305 67.9
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 4.2e-101 372.1 308 64.6
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 9.3e-101 370.9 273 73.6
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.1e-100 369.8 305 66.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.7e-100 369.4 304 66.8
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.7e-99 366.7 300 65.3
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.6e-99 364.8 295 66.1
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.8e-97 358.6 281 70.1
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.3e-94 350.5 281 66.9
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.4e-93 347.1 302 60.3
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 1.2e-92 344.0 305 60.0
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 2.1e-92 343.2 290 62.4
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.5e-90 337.0 296 62.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 1.4e-80 303.9 285 59.6
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 3.5e-76 289.3 237 67.9
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 8.7e-75 284.6 307 53.4
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 4.3e-74 282.3 195 73.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.9e-70 269.6 295 53.2
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.2e-69 265.0 195 73.8
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.5e-61 240.0 295 50.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.2e-61 239.6 296 48.3
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 2.3e-59 233.4 195 66.7
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 4.8e-57 225.7 159 74.2
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 2.4e-56 223.4 163 70.6
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.5e-55 220.7 211 63.0
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.6e-52 210.7 139 75.5
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.4e-51 207.6 203 56.2
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 5.2e-51 205.7 142 75.4
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 3.3e-50 203.0 336 42.3
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 4.4e-50 202.6 300 45.0
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.7e-44 183.3 236 51.7
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.4e-43 181.0 99 94.9
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-34 151.4 186 50.5
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.6e-34 150.2 115 73.0
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.3e-33 147.9 289 38.8
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 5.9e-31 139.0 182 42.9
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 5.9e-31 139.0 111 67.6
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.2e-27 125.9 97 71.1
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.0e-18 97.4 86 59.3
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 8.3e-17 92.0 295 30.2
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.1e-16 91.7 54 75.9
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 5.4e-16 89.4 58 72.4
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 2.3e-14 84.0 302 27.8
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.0e-14 83.6 85 60.0
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 5.0e-14 82.8 52 73.1
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.5e-13 80.5 176 36.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.0e-11 73.2 150 36.0


User provided reference genes

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