Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 8.9e-190 666.8 333 100.0
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 4.9e-172 607.8 333 91.6
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 4.6e-170 601.3 333 90.1
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 8.6e-169 597.0 333 89.2
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 5.2e-166 587.8 330 87.9
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.6e-138 496.5 327 71.3
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 8.7e-137 490.7 327 70.9
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 2.5e-136 489.2 324 73.5
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.3e-135 486.9 326 70.9
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.6e-135 486.5 326 69.6
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 3.4e-133 478.8 330 70.6
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.7e-132 476.5 346 66.5
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.2e-131 471.9 330 67.0
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.2e-130 470.3 325 68.3
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 2.1e-130 469.5 324 71.3
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.5e-130 468.8 326 67.5
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 3.0e-129 465.7 330 67.9
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 1.1e-128 463.8 324 67.9
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.1e-128 463.8 330 66.4
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.5e-128 463.4 330 67.9
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.9e-128 463.0 328 66.5
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.3e-128 462.2 327 68.2
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 9.6e-128 460.7 331 65.6
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 1.8e-126 456.4 324 66.7
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 3.1e-126 455.7 331 65.6
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 4.0e-126 455.3 331 65.6
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 9.0e-126 454.1 258 90.3
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.2e-125 453.8 331 65.9
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.5e-125 453.4 300 70.7
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 2.0e-125 453.0 331 65.3
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 3.4e-125 452.2 331 65.6
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 3.4e-125 452.2 331 65.6
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 4.5e-125 451.8 328 65.9
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.3e-124 450.3 331 65.0
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.2e-124 449.5 331 64.0
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 2.9e-124 449.1 324 65.7
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 2.9e-124 449.1 326 65.3
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.9e-124 449.1 332 65.4
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 8.4e-124 447.6 327 65.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.9e-123 446.4 324 65.4
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 3.2e-123 445.7 365 60.3
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 3.2e-123 445.7 330 63.3
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 4.2e-123 445.3 331 63.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 9.3e-123 444.1 331 64.7
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.2e-122 443.7 328 64.3
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.6e-122 443.4 331 64.4
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.6e-122 443.4 331 64.0
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 3.5e-122 442.2 330 64.2
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 4.6e-122 441.8 331 64.0
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.0e-121 440.7 326 63.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.0e-121 440.7 364 58.8
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.3e-121 439.5 330 63.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.0e-121 439.1 326 65.3
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.9e-121 438.7 331 63.1
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 5.1e-121 438.3 321 64.5
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 5.1e-121 438.3 326 64.4
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 8.7e-121 437.6 326 62.6
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.1e-120 437.2 332 62.7
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.1e-120 437.2 332 62.0
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.5e-120 436.8 364 58.5
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.9e-120 436.4 325 64.3
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 2.5e-120 436.0 332 62.0
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.5e-120 436.0 331 63.4
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 2.5e-120 436.0 326 62.3
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.5e-120 436.0 294 77.2
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 3.3e-120 435.6 334 62.0
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.7e-120 434.9 330 65.5
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 2.2e-119 433.0 328 61.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.2e-119 433.0 384 58.6
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 3.7e-119 432.2 323 63.2
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 4.1e-118 428.7 326 62.9
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 6.9e-118 427.9 327 62.4
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 6.9e-118 427.9 327 63.6
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 9.0e-118 427.6 326 62.3
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 9.0e-118 427.6 317 65.6
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.0e-118 427.6 341 63.6
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 2.0e-117 426.4 323 63.8
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.4e-117 425.6 325 61.8
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 5.9e-117 424.9 326 62.0
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 7.7e-117 424.5 341 63.0
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.6e-114 415.6 375 56.5
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 4.6e-114 415.2 327 62.1
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 3.0e-113 412.5 331 59.8
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 8.8e-113 411.0 327 62.7
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.1e-112 410.6 330 62.4
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 3.7e-111 405.6 329 62.0
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.5e-109 400.2 292 65.1
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 7.7e-109 397.9 352 57.4
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 2.9e-108 396.0 324 59.9
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.8e-108 395.6 330 61.2
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 3.2e-107 392.5 326 60.4
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 1.2e-106 390.6 327 59.3
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 2.0e-104 383.3 327 57.5
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 7.4e-104 381.3 295 65.1
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.4e-102 376.3 333 57.1
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 2.2e-100 369.8 250 67.6
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.1e-98 363.2 326 57.4
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 9.1e-94 347.8 236 70.3
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.2e-93 347.4 276 61.6
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.3e-92 344.0 244 70.5
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.5e-88 330.5 263 62.4
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 2.6e-88 329.7 329 52.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 3.5e-85 319.3 333 51.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.4e-80 302.4 185 73.0
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 8.3e-79 298.1 331 48.3
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 5.0e-76 288.9 188 70.2
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 8.6e-76 288.1 225 64.0
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.5e-75 287.3 224 62.5
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.3e-71 274.2 326 44.8
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 2.4e-70 270.0 331 44.7
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.3e-68 264.2 162 74.7
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.3e-68 264.2 330 43.0
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 8.6e-68 261.5 329 43.5
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 7.8e-61 238.4 328 43.6
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 9.5e-51 204.9 170 60.0
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.1e-50 203.8 160 60.6
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.5e-48 197.6 123 67.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 9.2e-46 188.3 166 59.6
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 3.4e-40 169.9 376 32.2
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 5.8e-40 169.1 200 53.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.5e-37 159.8 192 41.7
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 3.5e-37 159.8 354 33.1
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 5.1e-36 156.0 315 34.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 1.5e-35 154.5 153 51.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 1.7e-31 141.0 247 39.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 8.4e-31 138.7 144 51.4
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 4.6e-29 132.9 120 56.7
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.3e-26 124.8 355 30.7
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.0e-17 93.2 75 61.3
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 3.4e-16 90.1 60 71.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 7.1e-14 82.4 59 55.9
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.3e-12 78.2 65 58.5
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 2.8e-10 70.5 60 48.3
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 1.0e-07 62.0 60 48.3
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 1.3e-07 61.6 66 43.9


User provided reference genes

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