Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G802.8 Capsicum annuum HOM05D004450 ORTHO05D005491 8.3e-189 663.7 369 100.0
Sopen04g028830 Solanum pennellii HOM05D004450 ORTHO05D005491 7.5e-73 278.5 255 63.5
Solyc04g072630.4 Solanum lycopersicum HOM05D004450 ORTHO05D005491 3.7e-72 276.2 255 63.1
Nitab4.5_0004450g0020 Nicotiana tabacum HOM05D004450 ORTHO05D005491 2.0e-70 270.4 255 61.2
CAN.G535.11 Capsicum annuum HOM05D004450 ORTHO05D005491 4.6e-70 269.2 255 62.7
Nitab4.5_0002534g0010 Nicotiana tabacum HOM05D004450 ORTHO05D005491 5.6e-68 262.3 153 88.2
Peaxi162Scf00168g00521 Petunia axillaris HOM05D004450 ORTHO05D005491 2.3e-58 230.3 255 55.3
Cc10_g05930 Coffea canephora HOM05D004450 ORTHO05D005491 1.1e-47 194.9 150 69.3
Oeu024568.7 Olea europaea HOM05D004450 ORTHO05D005491 4.3e-44 183.0 150 64.7
Actinidia10290 Actinidia chinensis HOM05D004450 ORTHO05D005491 1.2e-41 174.9 149 61.7
Actinidia27250 Actinidia chinensis HOM05D004450 ORTHO05D005491 1.2e-41 174.9 149 59.7
Dinv13057 Davidia involucrata HOM05D004450 ORTHO05D005491 2.0e-41 174.1 149 62.4
vmacro21221 Vaccinium macrocarpon HOM05D004450 ORTHO05D005491 3.2e-39 166.8 150 60.0
Gohir.D06G038225 Gossypium hirsutum HOM05D004450 ORTHO05D005491 7.1e-39 165.6 154 58.4
Gorai.010G045100 Gossypium raimondii HOM05D004450 ORTHO05D005491 7.1e-39 165.6 154 58.4
Gohir.D06G040400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 9.3e-39 165.2 154 58.4
SalBow7G0866 Salvia bowleyana HOM05D004450 ORTHO05D005491 9.3e-39 165.2 183 52.5
Gohir.A06G039400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 1.2e-38 164.9 154 57.8
Gorai.010G042800 Gossypium raimondii HOM05D004450 ORTHO05D005491 1.2e-38 164.9 154 58.4
Ciclev10003301m.g Citrus clementina HOM05D004450 ORTHO05D005491 1.6e-38 164.5 154 59.1
Hma1.2p1_1649F.1_g295640 Hydrangea macrophylla HOM05D004450 ORTHO05D005491 1.6e-38 164.5 150 59.3
Cpa.g.sc66.104 Carica papaya HOM05D004450 ORTHO05D005491 2.1e-38 164.1 154 57.8
Rhsim06G0086600 Rhododendron simsii HOM05D004450 ORTHO05D005491 3.0e-37 160.2 150 56.7
GSVIVG01008970001 Vitis vinifera HOM05D004450 ORTHO05D005491 3.0e-37 160.2 154 58.4
Thecc.08G113700 Theobroma cacao HOM05D004450 ORTHO05D005491 5.1e-37 159.5 154 55.8
TWI36G0771 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 6.6e-37 159.1 211 46.4
Atru.chr13.1280 Acer truncatum HOM05D004450 ORTHO05D005491 8.7e-37 158.7 156 57.1
Potri.005G170066 Populus trichocarpa HOM05D004450 ORTHO05D005491 1.1e-36 158.3 155 58.7
QL12p035690 Quercus lobata HOM05D004450 ORTHO05D005491 1.1e-36 158.3 154 56.5
Duzib093G0537 Durio zibethinus HOM05D004450 ORTHO05D005491 1.5e-36 157.9 154 56.5
THA.LOC104800171 Tarenaya hassleriana HOM05D004450 ORTHO05D005491 3.3e-36 156.8 187 50.8
CSS0015865 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 5.6e-36 156.0 149 57.0
CSS0047020 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 9.6e-36 155.2 149 57.0
Sabra05G0127500 Salix brachista HOM05D004450 ORTHO05D005491 9.6e-36 155.2 153 58.2
Manes.02G157000 Manihot esculenta HOM05D004450 ORTHO05D005491 1.3e-35 154.8 150 60.0
Potri.002G091700 Populus trichocarpa HOM05D004450 ORTHO05D005491 1.6e-35 154.5 153 57.5
Sabra02G0072500 Salix brachista HOM05D004450 ORTHO05D005491 2.1e-35 154.1 155 58.1
Aa31LG7G6050 Aethionema arabicum HOM05D004450 ORTHO05D005491 1.1e-34 151.8 154 53.2
Gohir.D02G082600 Gossypium hirsutum HOM05D004450 ORTHO05D005491 4.0e-34 149.8 154 52.6
Gorai.005G092600 Gossypium raimondii HOM05D004450 ORTHO05D005491 4.0e-34 149.8 154 52.6
PGR042G3086 Punica granatum HOM05D004450 ORTHO05D005491 4.0e-34 149.8 152 55.9
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 6.9e-34 149.1 152 56.6
MD08G1176200 Malus domestica HOM05D004450 ORTHO05D005491 9.0e-34 148.7 152 55.3
Eucgr.H00921 Eucalyptus grandis HOM05D004450 ORTHO05D005491 1.5e-33 147.9 208 43.8
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 2.0e-33 147.5 152 55.3
FAN08G3465 Fragaria x ananassa HOM05D004450 ORTHO05D005491 2.0e-33 147.5 152 55.3
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 2.0e-33 147.5 152 55.9
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 2.0e-33 147.5 152 55.3
RcHm_v2.0_Chr7g0240181 Rosa chinensis HOM05D004450 ORTHO05D005491 2.0e-33 147.5 152 55.3
AT1G22060 Arabidopsis thaliana HOM05D004450 ORTHO05D005491 2.6e-33 147.1 154 53.9
Carub.0001s2162 Capsella rubella HOM05D004450 ORTHO05D005491 2.6e-33 147.1 186 48.4
Haze_00557 Corylus avellana HOM05D004450 ORTHO05D005491 2.6e-33 147.1 154 53.9
AL1G35490 Arabidopsis lyrata HOM05D004450 ORTHO05D005491 3.4e-33 146.7 158 53.2
Thhalv10006527m.g Eutrema salsugineum HOM05D004450 ORTHO05D005491 3.4e-33 146.7 153 54.9
unitig_749.g13887 Utricularia gibba HOM05D004450 ORTHO05D005491 4.5e-33 146.4 151 55.0
TWI56G0952 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 7.6e-33 145.6 154 51.3
BcaB07g32225 Brassica carinata HOM05D004450 ORTHO05D005491 9.9e-33 145.2 150 52.0
Cfa015933 Carpinus fangiana HOM05D004450 ORTHO05D005491 9.9e-33 145.2 154 52.6
Ah.05g168520 Amaranthus hybridus HOM05D004450 ORTHO05D005491 2.2e-32 144.1 153 55.6
CiPaw.05G231800 Carya illinoinensis HOM05D004450 ORTHO05D005491 2.2e-32 144.1 154 52.6
DCAR_008706 Daucus carota HOM05D004450 ORTHO05D005491 2.2e-32 144.1 135 56.3
Manes.18G071100 Manihot esculenta HOM05D004450 ORTHO05D005491 2.9e-32 143.7 151 54.3
CsaV3_5G023850 Cucumis sativus L. HOM05D004450 ORTHO05D005491 6.4e-32 142.5 155 51.0
Sp1g19560 Schrenkiella parvula HOM05D004450 ORTHO05D005491 6.4e-32 142.5 183 47.5
BcaC05g26132 Brassica carinata HOM05D004450 ORTHO05D005491 1.4e-31 141.4 150 53.3
BolC5t30807H Brassica oleracea HOM05D004450 ORTHO05D005491 1.4e-31 141.4 150 53.3
A09p42700 Brassica napus HOM05D004450 ORTHO05D005491 1.9e-31 141.0 153 52.3
BraA09t39746Z Brassica rapa HOM05D004450 ORTHO05D005491 1.9e-31 141.0 153 52.3
C05p21090 Brassica napus HOM05D004450 ORTHO05D005491 3.2e-31 140.2 152 53.3
MELO3C022819.2 Cucumis melo HOM05D004450 ORTHO05D005491 3.2e-31 140.2 155 49.7
Sed0020591 Sechium edule HOM05D004450 ORTHO05D005491 3.2e-31 140.2 151 53.0
Lsat_1_v5_gn_9_43360 Lactuca sativa HOM05D004450 ORTHO05D005491 5.4e-31 139.4 149 53.0
MD15G1361900 Malus domestica HOM05D004450 ORTHO05D005491 9.3e-31 138.7 152 52.0
Sc20g0003030 Simmondsia chinensis HOM05D004450 ORTHO05D005491 9.3e-31 138.7 154 51.3
ClCG03G008890 Citrullus lanatus HOM05D004450 ORTHO05D005491 1.2e-30 138.3 155 49.7
EL10Ac1g01695 Beta vulgaris HOM05D004450 ORTHO05D005491 1.6e-30 137.9 152 51.3
Prupe.1G510000 Prunus persica HOM05D004450 ORTHO05D005491 3.5e-30 136.7 152 50.7
AUR62034367 Chenopodium quinoa HOM05D004450 ORTHO05D005491 7.9e-30 135.6 152 53.3
TAR628G1211 Trochodendron aralioides HOM05D004450 ORTHO05D005491 7.9e-30 135.6 237 40.9
Hund26655 Selenicereus undatus HOM05D004450 ORTHO05D005491 2.3e-29 134.0 153 51.0
AUR62022339 Chenopodium quinoa HOM05D004450 ORTHO05D005491 3.9e-29 133.3 152 52.0
Medtr3g073620 Medicago truncatula HOM05D004450 ORTHO05D005491 5.1e-29 132.9 152 50.7
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 5.1e-29 132.9 154 50.6
Glyma.06G106900 Glycine max HOM05D004450 ORTHO05D005491 6.7e-29 132.5 152 50.0
VMungo1309G1299 Vigna mungo HOM05D004450 ORTHO05D005491 5.6e-28 129.4 152 48.0
SGA_v2.0_scaffold48G18010 Striga asiatica HOM05D004450 ORTHO05D005491 9.6e-28 128.6 151 51.0
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 1.6e-27 127.9 152 50.0
Glyma.04G107100 Glycine max HOM05D004450 ORTHO05D005491 2.1e-27 127.5 152 48.7
PSO675G2430 Papaver somniferum HOM05D004450 ORTHO05D005491 2.1e-27 127.5 187 46.0
Phvul.009G027200 Phaseolus vulgaris HOM05D004450 ORTHO05D005491 2.8e-27 127.1 152 48.0
Lalb_Chr23g0270731 Lupinus albus HOM05D004450 ORTHO05D005491 3.7e-27 126.7 152 48.0
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 1.1e-26 125.2 155 49.0
ECA232G3655 Erigeron canadensis HOM05D004450 ORTHO05D005491 1.1e-26 125.2 173 43.4
Migut.C00198 Erythranthe guttata HOM05D004450 ORTHO05D005491 1.1e-26 125.2 149 49.7
PSO541G1294 Papaver somniferum HOM05D004450 ORTHO05D005491 1.1e-26 125.2 185 44.3
Aqoxy6G00526 Aquilegia oxysepala HOM05D004450 ORTHO05D005491 6.9e-26 122.5 188 43.1
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 6.9e-26 122.5 151 45.0
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 6.9e-26 122.5 151 45.0
Lj1g0009455 Lotus japonicus HOM05D004450 ORTHO05D005491 1.2e-25 121.7 156 48.1
MBI02_g37828_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 1.5e-25 121.3 186 42.5
Lalb_Chr08g0241811 Lupinus albus HOM05D004450 ORTHO05D005491 1.3e-24 118.2 155 43.9
Dinv44729 Davidia involucrata HOM05D004450 ORTHO05D005491 2.2e-24 117.5 151 48.3
CANSAT25G3861 Cannabis sativa HOM05D004450 ORTHO05D005491 2.9e-24 117.1 137 50.4
Nn5g28982 Nelumbo nucifera HOM05D004450 ORTHO05D005491 8.4e-24 115.5 229 36.2
Lj4C711G4 Lonicera japonica HOM05D004450 ORTHO05D005491 4.2e-23 113.2 340 30.6
MBI05_g36570_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 2.6e-17 94.0 102 54.9
CDE08G0757 Ceratophyllum demersum HOM05D004450 ORTHO05D005491 2.9e-16 90.5 135 43.0
ATR0564G059 Amborella trichopoda HOM05D004450 ORTHO05D005491 2.1e-14 84.3 76 60.5
Lsat_1_v5_gn_1_4060 Lactuca sativa HOM05D004450 ORTHO05D005491 7.9e-14 82.4 78 57.7
Solyc08g008510.3 Solanum lycopersicum HOM05D002436 ORTHO05D002754 1.0e-13 82.0 107 64.5
Sopen08g004360 Solanum pennellii HOM05D002436 ORTHO05D002754 1.0e-13 82.0 107 64.5
ECA247G3327 Erigeron canadensis HOM05D004450 ORTHO05D005491 3.3e-12 77.0 69 59.4
PGSC0003DMG400005799 Solanum tuberosum HOM05D002436 ORTHO05D002754 4.3e-12 76.6 76 84.2
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 2.2e-11 74.3 43 88.4
HanXRQChr02g0043761 Helianthus annuus HOM05D004450 ORTHO05D005491 2.8e-11 73.9 64 54.7
Zm00001eb140390 Zea mays HOM05D004450 ORTHO05D005491 2.8e-11 73.9 70 55.7
ECA233G1501 Erigeron canadensis HOM05D002436 ORTHO05D002754 1.4e-10 71.6 73 80.8
HPP92_005785 Vanilla planifolia HOM05D004450 ORTHO05D005491 1.4e-10 71.6 72 54.2
HanXRQChr07g0189261 Helianthus annuus HOM05D002436 ORTHO05D002754 2.4e-10 70.9 73 79.5
CDE02G0839 Ceratophyllum demersum HOM05D004450 ORTHO05D005491 3.1e-10 70.5 148 35.8
HPP92_005804 Vanilla planifolia HOM05D004450 ORTHO05D005491 5.3e-10 69.7 95 43.2
Dinv12194 Davidia involucrata HOM05D002436 ORTHO05D002754 1.2e-09 68.6 76 78.9
Manes.01G052108 Manihot esculenta HOM05D002436 ORTHO05D002754 2.0e-09 67.8 76 77.6
Dinv02418 Davidia involucrata HOM05D002436 ORTHO05D002754 5.9e-09 66.2 76 77.6
CDE12G0294 Ceratophyllum demersum HOM05D002436 ORTHO05D002754 2.2e-08 64.3 107 47.7
HanXRQChr13g0415531 Helianthus annuus HOM05D002436 ORTHO05D002754 2.2e-08 64.3 73 74.0
Lj2A158T86 Lonicera japonica HOM05D002436 ORTHO05D002754 5.0e-08 63.2 76 73.7
CANSAT21G2172 Cannabis sativa HOM05D002436 ORTHO05D002754 6.5e-08 62.8 76 75.0
CSS0046293 Camellia sinensis var. sinensis HOM05D002436 ORTHO05D002754 8.5e-08 62.4 76 65.8
SalBow6G0415 Salvia bowleyana HOM05D002436 ORTHO05D002754 8.5e-08 62.4 73 76.7
vmacro11516 Vaccinium macrocarpon HOM05D002436 ORTHO05D002754 1.9e-07 61.2 76 75.0
SGA_v2.0_scaffold221G42689 Striga asiatica HOM05D002436 ORTHO05D002754 3.2e-07 60.5 73 75.3
MBI04_g06930_MAGBIO Magnolia biondii HOM05D002436 ORTHO05D002754 4.2e-07 60.1 76 73.7
SGA_v2.0_scaffold2G01023 Striga asiatica HOM05D002436 ORTHO05D002754 4.2e-07 60.1 76 73.7
Oeu041380.1 Olea europaea HOM05D000295 ORTHO05D002754 5.5e-07 59.7 96 61.5
Cc08_g16590 Coffea canephora HOM05D002436 ORTHO05D002754 7.2e-07 59.3 76 72.4
CSS0024505 Camellia sinensis var. sinensis HOM05D002436 ORTHO05D002754 9.4e-07 58.9 76 67.1
TAR374G1290 Trochodendron aralioides HOM05D002436 ORTHO05D002754 9.4e-07 58.9 76 72.4
Nitab4.5_0005042g0020 Nicotiana tabacum HOM05D002436 ORTHO05D002754 1.2e-06 58.5 107 55.1
TAR629G0988 Trochodendron aralioides HOM05D002436 ORTHO05D002754 2.7e-06 57.4 73 65.8
Ciclev10020047m.g Citrus clementina HOM05D002436 ORTHO05D002754 3.6e-06 57.0 76 72.4
Migut.F01458 Erythranthe guttata HOM05D002436 ORTHO05D002754 4.6e-06 56.6 76 71.1
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 6.1e-06 56.2 39 66.7


User provided reference genes

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