Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G802.3 Capsicum annuum HOM05D000654 ORTHO05D002330 1.3e-44 183.3 144 100.0
CAN.G640.1 Capsicum annuum HOM05D000654 ORTHO05D002330 4.1e-27 125.2 107 70.1
CAN.G1666.1 Capsicum annuum HOM05D000654 ORTHO05D002330 1.6e-26 123.2 87 79.3
CAN.G537.9 Capsicum annuum HOM05D000654 ORTHO05D002330 6.0e-26 121.3 79 84.8
CAN.G938.4 Capsicum annuum HOM05D000654 ORTHO05D002330 3.9e-25 118.6 87 77.0
CAN.G437.20 Capsicum annuum HOM05D000654 ORTHO05D002330 3.1e-22 109.0 88 70.5
CAN.G385.11 Capsicum annuum HOM05D000654 ORTHO05D002330 2.6e-21 105.9 89 70.8
Solyc06g060320.4 Solanum lycopersicum HOM05D000654 ORTHO05D002330 2.6e-21 105.9 65 90.8
Sopen06g020440 Solanum pennellii HOM05D000654 ORTHO05D002330 2.6e-21 105.9 65 90.8
CAN.G27.45 Capsicum annuum HOM05D000654 ORTHO05D002330 4.4e-21 105.1 86 72.1
Nitab4.5_0000322g0170 Nicotiana tabacum HOM05D000654 ORTHO05D002330 1.1e-19 100.5 65 84.6
Nitab4.5_0004044g0010 Nicotiana tabacum HOM05D000654 ORTHO05D002330 1.9e-19 99.8 65 84.6
Peaxi162Scf00051g00107 Petunia axillaris HOM05D000654 ORTHO05D002330 4.6e-18 95.1 65 83.1
Nitab4.5_0001996g0070 Nicotiana tabacum HOM05D000654 ORTHO05D002330 6.6e-17 91.3 70 74.3
Nitab4.5_0001803g0040 Nicotiana tabacum HOM05D000654 ORTHO05D002330 1.9e-16 89.7 70 72.9
PGSC0003DMG400000896 Solanum tuberosum HOM05D000654 ORTHO05D002330 2.5e-16 89.4 70 72.9
Sopen11g007600 Solanum pennellii HOM05D000654 ORTHO05D002330 5.6e-16 88.2 70 71.4
Hma1.2p1_0129F.1_g060210 Hydrangea macrophylla HOM05D000654 ORTHO05D002330 1.8e-14 83.2 70 65.7
MSTRG.1439 Avicennia marina HOM05D000654 ORTHO05D002330 4.0e-14 82.0 70 67.1
Migut.N03280 Erythranthe guttata HOM05D000654 ORTHO05D002330 1.5e-13 80.1 70 68.6
SalBow7G1808 Salvia bowleyana HOM05D000654 ORTHO05D002330 2.6e-13 79.3 70 64.3
MSTRG.25380 Avicennia marina HOM05D000654 ORTHO05D002330 9.9e-13 77.4 70 61.4
GSVIVG01008864001 Vitis vinifera HOM05D000654 ORTHO05D002330 1.3e-12 77.0 70 62.9
Actinidia02621 Actinidia chinensis HOM05D000654 ORTHO05D002330 2.2e-12 76.3 70 65.7
Sabra02G0065400 Salix brachista HOM05D000654 ORTHO05D002330 2.2e-12 76.3 91 54.9
Dinv07217 Davidia involucrata HOM05D000654 ORTHO05D002330 2.9e-12 75.9 66 66.7
HanXRQChr05g0151081 Helianthus annuus HOM05D000654 ORTHO05D002330 2.9e-12 75.9 73 61.6
Potri.005G178100 Populus trichocarpa HOM05D000654 ORTHO05D002330 2.9e-12 75.9 65 67.7
Lj7C341T3 Lonicera japonica HOM05D000654 ORTHO05D002330 4.9e-12 75.1 70 60.0
Lju12250C0T2 Lonicera japonica HOM05D000654 ORTHO05D002330 4.9e-12 75.1 70 60.0
Hma1.2p1_1519F.1_g288570 Hydrangea macrophylla HOM05D000654 ORTHO05D002330 6.4e-12 74.7 57 73.7
Potri.002G083400 Populus trichocarpa HOM05D000654 ORTHO05D002330 1.1e-11 73.9 65 64.6
QL10p040142 Quercus lobata HOM05D000654 ORTHO05D002330 1.4e-11 73.6 59 67.8
TAR376G0691 Trochodendron aralioides HOM05D000654 ORTHO05D002330 2.4e-11 72.8 62 64.5
GSVIVG01022370001 Vitis vinifera HOM05D000654 ORTHO05D002330 2.4e-11 72.8 59 66.1
Dinv27310 Davidia involucrata HOM05D000654 ORTHO05D002330 4.2e-11 72.0 70 60.0
Gohir.A06G044900 Gossypium hirsutum HOM05D000654 ORTHO05D002330 5.4e-11 71.6 60 63.3
Gohir.D06G045400 Gossypium hirsutum HOM05D000654 ORTHO05D002330 5.4e-11 71.6 60 63.3
Gorai.010G050400 Gossypium raimondii HOM05D000654 ORTHO05D002330 5.4e-11 71.6 60 63.3
Manes.02G163500 Manihot esculenta HOM05D000654 ORTHO05D002330 5.4e-11 71.6 65 64.6
CiPaw.05G221200 Carya illinoinensis HOM05D000654 ORTHO05D002330 9.3e-11 70.9 77 61.0
Cc10_g11930 Coffea canephora HOM05D000654 ORTHO05D002330 9.3e-11 70.9 65 60.0
Gorai.009G245900 Gossypium raimondii HOM05D000654 ORTHO05D002330 9.3e-11 70.9 68 63.2
MD08G1162500 Malus domestica HOM05D000654 ORTHO05D002330 9.3e-11 70.9 54 77.8
vmacro12533 Vaccinium macrocarpon HOM05D000654 ORTHO05D002330 9.3e-11 70.9 70 61.4
Atru.chr13.1463 Acer truncatum HOM05D000654 ORTHO05D002330 1.2e-10 70.5 65 64.6
Atru.chr13.1485 Acer truncatum HOM05D000654 ORTHO05D002330 1.2e-10 70.5 65 64.6
Aqoxy6G00220 Aquilegia oxysepala HOM05D000654 ORTHO05D002330 1.2e-10 70.5 60 63.3
CiPaw.04G077200 Carya illinoinensis HOM05D000654 ORTHO05D002330 1.2e-10 70.5 59 67.8
CiPaw.03G115400 Carya illinoinensis HOM05D000654 ORTHO05D002330 1.6e-10 70.1 59 66.1
COL.COLO4_12114 Corchorus olitorius HOM05D000654 ORTHO05D002330 1.6e-10 70.1 71 54.9
Rhsim06G0103200 Rhododendron simsii HOM05D000654 ORTHO05D002330 1.6e-10 70.1 70 61.4
Dinv40960 Davidia involucrata HOM05D000654 ORTHO05D002330 2.7e-10 69.3 54 70.4
ECA246G2305 Erigeron canadensis HOM05D000654 ORTHO05D002330 2.7e-10 69.3 57 70.2
Manes.18G077439 Manihot esculenta HOM05D000654 ORTHO05D002330 2.7e-10 69.3 68 63.2
SGA_v2.0_scaffold25G11129 Striga asiatica HOM05D000654 ORTHO05D002330 2.7e-10 69.3 65 64.6
Actinidia16515 Actinidia chinensis HOM05D000654 ORTHO05D002330 3.5e-10 68.9 54 70.4
DCAR_014389 Daucus carota HOM05D000654 ORTHO05D002330 3.5e-10 68.9 67 61.2
HanXRQChr10g0304071 Helianthus annuus HOM05D000654 ORTHO05D002330 6.0e-10 68.2 59 67.8
Atru.chr4.1113 Acer truncatum HOM05D000654 ORTHO05D002330 7.9e-10 67.8 52 69.2
CANSAT01G2067 Cannabis sativa HOM05D000654 ORTHO05D002330 7.9e-10 67.8 54 72.2
Gohir.D05G237500 Gossypium hirsutum HOM05D000654 ORTHO05D002330 7.9e-10 67.8 68 61.8
PSO528G0099 Papaver somniferum HOM05D000654 ORTHO05D002330 7.9e-10 67.8 72 54.2
CSS0013859 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002330 1.0e-09 67.4 70 60.0
Ciclev10000549m.g Citrus clementina HOM05D000654 ORTHO05D002330 1.3e-09 67.0 67 58.2
Lj2A608T38 Lonicera japonica HOM05D000654 ORTHO05D002330 1.3e-09 67.0 55 70.9
Sabra05G0134500 Salix brachista HOM05D000654 ORTHO05D002330 1.3e-09 67.0 65 63.1
Cpa.g.sc64.89 Carica papaya HOM05D000654 ORTHO05D002330 1.8e-09 66.6 58 65.5
Thecc.01G142000 Theobroma cacao HOM05D000654 ORTHO05D002330 1.8e-09 66.6 53 67.9
MELO3C010611.2 Cucumis melo HOM05D000654 ORTHO05D002330 2.3e-09 66.2 75 58.7
Nn1g08795 Nelumbo nucifera HOM05D000654 ORTHO05D002330 2.3e-09 66.2 69 58.0
AUR62006906 Chenopodium quinoa HOM05D000654 ORTHO05D002330 3.0e-09 65.9 68 54.4
Lsat_1_v5_gn_6_112901 Lactuca sativa HOM05D000654 ORTHO05D002330 3.9e-09 65.5 55 69.1
Sabra07G0081900 Salix brachista HOM05D000654 ORTHO05D002330 3.9e-09 65.5 54 66.7
Sed0008177 Sechium edule HOM05D000654 ORTHO05D002330 3.9e-09 65.5 77 54.5
Eucgr.F04348 Eucalyptus grandis HOM05D000654 ORTHO05D002330 5.1e-09 65.1 62 61.3
QL09p034567 Quercus lobata HOM05D000654 ORTHO05D002330 5.1e-09 65.1 64 57.8
RcHm_v2.0_Chr6g0295851 Rosa chinensis HOM05D000654 ORTHO05D002330 5.1e-09 65.1 59 62.7
Sc16g0009680 Simmondsia chinensis HOM05D000654 ORTHO05D002330 5.1e-09 65.1 54 66.7
CsaV3_6G034470 Cucumis sativus L. HOM05D000654 ORTHO05D002330 6.7e-09 64.7 75 57.3
Eucgr.H05077 Eucalyptus grandis HOM05D000654 ORTHO05D002330 6.7e-09 64.7 59 61.0
Oeu028235.1 Olea europaea HOM05D000654 ORTHO05D002330 6.7e-09 64.7 53 69.8
Potri.007G098500 Populus trichocarpa HOM05D000654 ORTHO05D002330 6.7e-09 64.7 54 64.8
TWI60G0616 Tripterygium wilfordii HOM05D000654 ORTHO05D002330 6.7e-09 64.7 70 55.7
TWI79G0039 Tripterygium wilfordii HOM05D000654 ORTHO05D002330 6.7e-09 64.7 59 61.0
TAR381G0379 Trochodendron aralioides HOM05D000654 ORTHO05D002330 6.7e-09 64.7 62 64.5
Ah.02g117680 Amaranthus hybridus HOM05D000654 ORTHO05D002330 8.7e-09 64.3 78 51.3
Oeu050104.2 Olea europaea HOM05D000654 ORTHO05D002330 1.1e-08 63.9 53 67.9
TAR625G0483 Trochodendron aralioides HOM05D000654 ORTHO05D002330 1.1e-08 63.9 60 65.0
AUR62000554 Chenopodium quinoa HOM05D000654 ORTHO05D002330 1.5e-08 63.5 68 52.9
Nitab4.5_0000856g0180 Nicotiana tabacum HOM05D000654 ORTHO05D002330 1.5e-08 63.5 62 61.3
Nitab4.5_0010345g0020 Nicotiana tabacum HOM05D000654 ORTHO05D002330 1.5e-08 63.5 54 68.5
Potri.005G070400 Populus trichocarpa HOM05D000654 ORTHO05D002330 1.5e-08 63.5 59 59.3
Rhsim10G0129600 Rhododendron simsii HOM05D000654 ORTHO05D002330 1.5e-08 63.5 54 66.7
Sed0013030 Sechium edule HOM05D000654 ORTHO05D002330 1.5e-08 63.5 75 54.7
SGA_v2.0_scaffold28G11995 Striga asiatica HOM05D000654 ORTHO05D002330 1.5e-08 63.5 56 66.1
Thecc.08G125700 Theobroma cacao HOM05D000654 ORTHO05D002330 1.5e-08 63.5 58 63.8
CSS0002986 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002330 1.9e-08 63.2 54 70.4
CANSAT25G0926 Cannabis sativa HOM05D000654 ORTHO05D002330 1.9e-08 63.2 77 54.5
ClCG08G005650 Citrullus lanatus HOM05D000654 ORTHO05D002330 1.9e-08 63.2 91 50.5
Aa31LG5G15760 Aethionema arabicum HOM05D000654 ORTHO05D002330 2.5e-08 62.8 55 63.6
DCAR_030969 Daucus carota HOM05D000654 ORTHO05D002330 2.5e-08 62.8 58 63.8
Duzib187G1539 Durio zibethinus HOM05D000654 ORTHO05D002330 3.3e-08 62.4 55 61.8
vmacro12770 Vaccinium macrocarpon HOM05D000654 ORTHO05D002330 3.3e-08 62.4 52 67.3
Gohir.A05G235200 Gossypium hirsutum HOM05D000654 ORTHO05D002330 4.3e-08 62.0 68 57.4
Nn5g28299 Nelumbo nucifera HOM05D000654 ORTHO05D002330 4.3e-08 62.0 62 53.2
PSO170G6784 Papaver somniferum HOM05D000654 ORTHO05D002330 4.3e-08 62.0 56 62.5
Hund07210 Selenicereus undatus HOM05D000654 ORTHO05D002330 4.3e-08 62.0 66 59.1
DCAR_002180 Daucus carota HOM05D000654 ORTHO05D002330 5.6e-08 61.6 54 63.0
Prupe.4G281900 Prunus persica HOM05D000654 ORTHO05D002330 5.6e-08 61.6 59 61.0
PGR044G0566 Punica granatum HOM05D000654 ORTHO05D002330 5.6e-08 61.6 75 54.7
TWI75G0583 Tripterygium wilfordii HOM05D000654 ORTHO05D002330 5.6e-08 61.6 60 60.0
AL2G37790 Arabidopsis lyrata HOM05D000654 ORTHO05D002330 7.4e-08 61.2 58 58.6
Sabra05G0057200 Salix brachista HOM05D000654 ORTHO05D002330 7.4e-08 61.2 62 56.5
Carub.0003s0452 Capsella rubella HOM05D000654 ORTHO05D002330 9.6e-08 60.8 55 63.6
AT1G77580 Arabidopsis thaliana HOM05D000654 ORTHO05D002330 1.3e-07 60.5 61 59.0
MSTRG.3599 Avicennia marina HOM05D000654 ORTHO05D002330 1.3e-07 60.5 63 61.9
Ciclev10000438m.g Citrus clementina HOM05D000654 ORTHO05D002330 1.3e-07 60.5 58 60.3
COL.COLO4_08076 Corchorus olitorius HOM05D000654 ORTHO05D002330 1.3e-07 60.5 64 60.9
Gohir.D10G107200 Gossypium hirsutum HOM05D000654 ORTHO05D002330 1.3e-07 60.5 55 63.6
Gorai.011G117600 Gossypium raimondii HOM05D000654 ORTHO05D002330 1.3e-07 60.5 55 63.6
Oeu037846.2 Olea europaea HOM05D000654 ORTHO05D002330 1.3e-07 60.5 57 61.4
AT3G05270 Arabidopsis thaliana HOM05D000654 ORTHO05D002330 2.1e-07 59.7 55 61.8
arahy.Tifrunner.gnm1.ann1.K0RA2B Arachis hypogaea HOM05D000654 ORTHO05D002330 2.1e-07 59.7 76 52.6
arahy.Tifrunner.gnm1.ann1.RFHL3Y Arachis hypogaea HOM05D000654 ORTHO05D002330 2.1e-07 59.7 76 52.6
FAN15G0872 Fragaria x ananassa HOM05D000654 ORTHO05D002330 2.1e-07 59.7 53 64.2
THA.LOC104824769 Tarenaya hassleriana HOM05D000654 ORTHO05D002330 2.1e-07 59.7 87 48.3
AL3G15710 Arabidopsis lyrata HOM05D000654 ORTHO05D002330 2.8e-07 59.3 55 61.8
MD15G1138800 Malus domestica HOM05D000654 ORTHO05D002330 2.8e-07 59.3 53 66.0
CARHR071090 Cardamine hirsuta HOM05D000654 ORTHO05D002330 3.7e-07 58.9 54 63.0
Cc07_g19530 Coffea canephora HOM05D000654 ORTHO05D002330 3.7e-07 58.9 63 58.7
Gohir.A10G067800 Gossypium hirsutum HOM05D000654 ORTHO05D002330 3.7e-07 58.9 55 61.8
PGSC0003DMG400003393 Solanum tuberosum HOM05D000654 ORTHO05D002330 3.7e-07 58.9 62 56.5
Cpa.g.sc37.39 Carica papaya HOM05D000654 ORTHO05D002330 4.8e-07 58.5 59 54.2
HanXRQChr15g0468981 Helianthus annuus HOM05D000654 ORTHO05D002330 4.8e-07 58.5 54 63.0
FAN28G2592 Fragaria x ananassa HOM05D000654 ORTHO05D002330 6.2e-07 58.2 54 63.0
Lsat_1_v5_gn_5_69380 Lactuca sativa HOM05D000654 ORTHO05D002330 6.2e-07 58.2 53 62.3
Lalb_Chr12g0202911 Lupinus albus HOM05D000654 ORTHO05D002330 6.2e-07 58.2 57 59.6
CDE02G3776 Ceratophyllum demersum HOM05D001512 ORTHO05D001574 8.1e-07 57.8 60 58.3
CDE08G1638 Ceratophyllum demersum HOM05D000654 ORTHO05D002330 8.1e-07 57.8 62 54.8
FAN20G2000 Fragaria x ananassa HOM05D000654 ORTHO05D002330 8.1e-07 57.8 52 63.5
Lj4g0021514 Lotus japonicus HOM05D000654 ORTHO05D002330 8.1e-07 57.8 54 63.0
SalBow7G0427 Salvia bowleyana HOM05D000654 ORTHO05D002330 1.1e-06 57.4 52 65.4
FAN23G0506 Fragaria x ananassa HOM05D000654 ORTHO05D002330 1.4e-06 57.0 54 61.1
EL10Ac4g09664 Beta vulgaris HOM05D000654 ORTHO05D002330 1.8e-06 56.6 108 40.7
MBI09_g42045_MAGBIO Magnolia biondii HOM05D000654 ORTHO05D002330 1.8e-06 56.6 57 59.6
Phvul.002G276100 Phaseolus vulgaris HOM05D000654 ORTHO05D002330 1.8e-06 56.6 61 62.3
RcHm_v2.0_Chr2g0123661 Rosa chinensis HOM05D000654 ORTHO05D002330 1.8e-06 56.6 59 59.3
ECA233G0798 Erigeron canadensis HOM05D000654 ORTHO05D002330 2.4e-06 56.2 64 51.6
PGR102G0179 Punica granatum HOM05D000654 ORTHO05D002330 2.4e-06 56.2 55 56.4
Sopen12g027110 Solanum pennellii HOM05D000654 ORTHO05D002330 2.4e-06 56.2 62 58.1
Carub.0002s2447 Capsella rubella HOM05D000654 ORTHO05D002330 3.1e-06 55.8 61 57.4
FvH4_2g26980 Fragaria vesca HOM05D000654 ORTHO05D002330 3.1e-06 55.8 52 61.5
FAN24G3269 Fragaria x ananassa HOM05D000654 ORTHO05D002330 3.1e-06 55.8 52 61.5
Sp5g32730 Schrenkiella parvula HOM05D000654 ORTHO05D002330 3.1e-06 55.8 58 55.2
VMungo0251G3595 Vigna mungo HOM05D000654 ORTHO05D002330 3.1e-06 55.8 61 57.4
FvH4_1g25530 Fragaria vesca HOM05D000654 ORTHO05D002330 4.0e-06 55.5 54 59.3
FAN19G1344 Fragaria x ananassa HOM05D000654 ORTHO05D002330 4.0e-06 55.5 54 59.3
Solyc12g068070.2 Solanum lycopersicum HOM05D000654 ORTHO05D002330 4.0e-06 55.5 62 58.1
Ah.06g188580 Amaranthus hybridus HOM05D000654 ORTHO05D002330 5.3e-06 55.1 58 55.2
SGA_v2.0_scaffold30G12351 Striga asiatica HOM05D000654 ORTHO05D002330 5.3e-06 55.1 54 63.0
Aa31LG4G7690 Aethionema arabicum HOM05D000654 ORTHO05D002330 6.9e-06 54.7 53 62.3
BcaC08g47602 Brassica carinata HOM05D000654 ORTHO05D002330 6.9e-06 54.7 66 50.0
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 6.9e-06 54.7 66 50.0
BolC6t40181H Brassica oleracea HOM05D000654 ORTHO05D002330 6.9e-06 54.7 66 50.0
CARHR079610 Cardamine hirsuta HOM05D000654 ORTHO05D002330 6.9e-06 54.7 56 60.7
DCAR_016683 Daucus carota HOM05D000654 ORTHO05D002330 6.9e-06 54.7 70 54.3
FAN26G0370 Fragaria x ananassa HOM05D000654 ORTHO05D002330 6.9e-06 54.7 54 59.3
Glyma.08G003200 Glycine max HOM05D000654 ORTHO05D002330 6.9e-06 54.7 66 56.1
Hund21790 Selenicereus undatus HOM05D000654 ORTHO05D002330 6.9e-06 54.7 68 48.5
VMungo1309G2795 Vigna mungo HOM05D000654 ORTHO05D002330 6.9e-06 54.7 94 44.7
ECA248G3221 Erigeron canadensis HOM05D000654 ORTHO05D002330 9.0e-06 54.3 55 58.2
Lsat_1_v5_gn_7_77260 Lactuca sativa HOM05D000654 ORTHO05D002330 9.0e-06 54.3 54 55.6


User provided reference genes

Program Settings