Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.9e-182 641.3 327 100.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.8e-171 605.9 322 95.3
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-170 602.8 321 95.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.7e-169 599.4 322 94.1
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.9e-169 598.6 320 95.3
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 8.8e-166 587.0 325 92.6
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.5e-162 576.2 322 91.9
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.3e-142 509.2 323 77.7
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.3e-140 503.4 323 77.1
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.1e-139 498.8 325 76.9
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.0e-139 497.7 325 76.9
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.6e-138 496.5 325 76.0
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.0e-138 496.1 325 76.0
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 5.0e-137 491.5 326 73.3
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 8.5e-137 490.7 323 73.7
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.5e-137 490.7 326 75.5
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.9e-136 489.6 323 72.8
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 4.2e-136 488.4 323 75.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.0e-135 484.2 323 74.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 8.3e-132 474.2 323 70.0
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.0e-131 471.1 323 71.8
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.0e-130 469.5 323 72.4
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.5e-130 468.8 323 71.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.7e-130 467.6 325 72.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 5.0e-129 464.9 324 71.3
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.9e-128 463.0 323 70.9
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.6e-127 459.9 323 70.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 3.6e-127 458.8 334 70.1
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.0e-126 457.2 323 70.3
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.4e-126 456.8 325 71.1
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.8e-126 456.4 324 70.7
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.0e-126 455.7 323 68.7
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 6.8e-126 454.5 323 69.7
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 8.9e-126 454.1 324 68.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.2e-125 453.8 324 67.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.2e-124 449.5 325 67.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.8e-124 449.1 323 68.1
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.7e-124 448.7 324 69.4
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.9e-124 448.4 324 67.0
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-123 447.2 323 67.2
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-123 447.2 325 68.6
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.4e-123 446.8 323 68.1
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.4e-123 446.0 321 68.8
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 5.4e-123 444.9 320 66.2
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.4e-123 444.9 323 68.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 9.2e-123 444.1 322 68.3
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.0e-122 443.0 322 67.7
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-122 443.0 323 66.6
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.5e-122 442.2 322 65.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.9e-122 441.4 322 68.3
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 5.9e-122 441.4 325 69.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 5.9e-122 441.4 325 67.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 5.9e-122 441.4 323 69.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.0e-121 440.7 325 67.1
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.3e-121 440.3 324 70.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.7e-121 439.9 323 67.2
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.7e-121 439.9 325 67.1
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.7e-121 439.9 325 67.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.3e-121 439.5 322 66.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.9e-121 439.1 323 67.8
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.9e-121 438.7 323 67.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 6.6e-121 438.0 322 67.7
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.5e-120 436.0 319 66.5
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 5.6e-120 434.9 320 66.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 9.5e-120 434.1 322 65.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.2e-119 433.7 323 64.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 6.1e-119 431.4 322 66.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 8.0e-119 431.0 322 65.5
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.8e-118 429.9 322 66.1
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 5.2e-118 428.3 322 64.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 5.2e-118 428.3 323 66.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 6.8e-118 427.9 319 65.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 4.4e-117 425.2 307 68.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.7e-116 423.3 320 65.3
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.2e-116 422.9 318 66.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.9e-116 422.5 319 64.6
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.3e-116 421.0 322 65.2
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.0e-114 416.4 307 67.1
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.0e-114 416.4 322 64.0
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 6.0e-114 414.8 370 58.6
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.3e-112 409.1 323 64.1
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.3e-112 409.1 323 63.8
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.3e-112 408.7 323 62.2
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.3e-112 407.9 325 63.1
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.6e-111 406.8 324 60.8
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.6e-111 405.6 324 62.0
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.1e-110 402.5 279 71.7
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 4.0e-110 402.1 324 60.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.9e-110 401.0 323 60.7
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.2e-109 400.6 324 59.6
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.5e-109 400.2 324 60.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 2.6e-109 399.4 323 61.0
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.6e-109 399.4 323 60.7
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 4.4e-109 398.7 294 65.6
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.5e-109 397.9 324 61.1
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 7.5e-109 397.9 413 55.0
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 9.8e-109 397.5 324 59.9
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 9.8e-109 397.5 324 59.3
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.4e-108 394.8 305 62.6
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 6.4e-108 394.8 323 61.9
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.4e-107 392.9 266 73.7
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 5.4e-107 391.7 324 59.0
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.5e-104 382.9 322 61.5
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.3e-104 382.5 324 58.0
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.3e-104 382.1 324 58.0
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.2e-103 378.3 324 57.7
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.1e-102 377.5 255 72.5
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.8e-102 376.7 325 57.5
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.3e-102 376.3 375 55.7
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.1e-102 375.9 541 41.0
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.6e-97 358.2 287 60.6
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.6e-97 358.2 327 57.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-96 357.5 323 55.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.3e-96 354.8 328 57.0
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.0e-94 349.0 323 54.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.8e-93 345.1 685 35.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.7e-90 336.3 287 60.3
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.9e-89 332.4 323 53.9
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.3e-88 328.2 324 54.0
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-85 320.9 265 60.0
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.5e-85 320.5 272 61.0
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 5.4e-83 312.0 222 68.9
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.2e-82 310.8 232 64.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.5e-82 309.3 310 48.1
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.6e-82 308.9 317 48.9
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.5e-80 303.1 307 50.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-79 300.4 203 75.4
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 9.9e-77 291.2 255 58.4
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.3e-72 275.8 308 47.1
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.8e-70 270.4 176 75.0
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.1e-67 261.2 221 60.6
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 8.8e-49 198.4 298 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 3.4e-45 186.4 195 47.2
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 8.2e-31 138.7 96 72.9
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.6e-29 133.7 75 78.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 8.5e-28 128.6 88 72.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-27 128.3 96 62.5
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.6e-26 123.2 95 61.1
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.1e-26 122.5 95 61.1
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 7.5e-24 115.5 96 59.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 9.8e-24 115.2 121 52.9
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.2e-21 108.2 335 27.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.5e-19 100.5 88 58.0
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.7e-18 97.1 83 55.4
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.3e-12 77.4 78 53.8
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-08 64.7 54 63.0
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-08 64.7 54 63.0
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 2.0e-08 64.3 54 63.0
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.4e-08 63.5 43 69.8
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 7.5e-08 62.4 93 46.2
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 7.5e-08 62.4 56 55.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.3e-07 61.6 70 48.6


User provided reference genes

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