Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 7.4e-124 447.2 224 100.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.6e-105 386.3 235 85.1
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.6e-105 386.3 235 85.1
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.6e-105 386.3 235 85.1
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.6e-105 386.3 235 85.1
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 7.7e-105 384.0 235 84.7
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 4.7e-94 348.2 235 78.7
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 8.9e-85 317.4 235 73.6
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-80 302.4 177 87.6
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 1.5e-79 300.1 235 69.8
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.4e-77 293.5 246 66.3
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 5.2e-77 291.6 219 69.9
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-75 287.0 226 68.1
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-75 287.0 226 68.1
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 2.2e-75 286.2 222 68.0
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-75 285.0 229 69.0
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-75 285.0 229 69.0
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-75 285.0 229 69.0
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-75 285.0 229 69.0
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 6.4e-75 284.6 173 83.8
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-74 283.9 226 67.7
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 3.2e-74 282.3 219 69.9
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 3.2e-74 282.3 219 69.9
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 5.0e-72 275.0 232 65.9
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 5.0e-72 275.0 232 65.9
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-71 273.1 163 86.5
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-71 273.1 163 86.5
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.9e-71 273.1 232 64.2
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 5.6e-71 271.6 221 65.6
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-70 270.0 240 61.7
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 4.7e-70 268.5 212 66.0
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-69 265.4 233 62.2
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-69 265.4 233 62.2
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-69 265.4 233 62.2
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-69 265.4 233 62.2
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-69 265.4 233 62.2
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-69 265.4 233 62.2
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 4.0e-69 265.4 227 63.0
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 4.0e-69 265.4 227 63.0
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 4.0e-69 265.4 227 63.0
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 4.0e-69 265.4 227 63.0
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 5.2e-69 265.0 233 62.2
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 5.2e-69 265.0 233 62.2
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 7.5e-68 261.2 227 62.1
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-67 260.4 233 61.4
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 4.9e-67 258.5 232 62.1
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 7.1e-66 254.6 218 65.6
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.3e-64 250.4 206 65.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 3.0e-64 249.2 224 60.7
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.6e-60 236.1 219 59.4
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 5.8e-60 235.0 206 62.1
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 7.6e-60 234.6 209 60.3
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.7e-56 223.4 176 69.9
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.7e-56 223.4 205 58.0
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 5.6e-55 218.4 182 63.7
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 3.1e-53 212.6 175 65.7
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.0e-53 212.2 165 69.1
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 5.2e-53 211.8 202 58.9
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 8.9e-53 211.1 199 62.3
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-52 210.7 213 55.4
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-52 210.7 189 61.9
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.3e-48 196.4 200 54.0
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.3e-48 196.4 200 54.0
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.3e-48 196.4 200 54.0
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.3e-48 196.4 200 54.0
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.3e-48 196.4 200 54.0
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 7.3e-47 191.4 197 51.8
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-46 190.7 174 64.9
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.3e-43 180.6 104 80.8
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 2.9e-43 179.5 159 61.0
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 8.4e-43 177.9 176 58.5
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.2e-42 175.6 90 91.1
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.2e-42 175.6 90 91.1
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.4e-42 175.3 94 84.0
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.7e-41 172.9 170 60.6
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.6e-41 172.2 98 82.7
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 8.7e-40 167.9 98 80.6
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.1e-39 167.5 127 65.4
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 4.5e-36 155.6 120 65.0
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 9.9e-36 154.5 150 58.0
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 1.4e-34 150.6 232 36.6
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.5e-34 148.7 102 80.4
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 7.1e-34 148.3 79 82.3
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.7e-33 146.4 76 82.9
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.7e-32 141.4 76 81.6
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.1e-31 141.0 139 58.3
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.3e-30 137.5 125 62.4
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.1e-29 132.9 165 46.7
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.1e-29 132.9 165 47.3
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.0e-29 132.5 121 61.2
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.2e-28 131.0 252 32.5
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-27 127.9 68 83.8
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.7e-27 127.1 142 53.5
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 8.4e-27 124.8 141 51.8
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 3.2e-26 122.9 106 71.7
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 7.1e-26 121.7 136 52.2
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 9.3e-26 121.3 83 67.5
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.0e-25 118.6 200 40.0
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 1.0e-24 117.9 214 41.1
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.7e-24 114.8 88 75.0
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 2.5e-23 113.2 70 87.1
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.3e-23 112.5 106 58.5
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-22 109.0 87 70.1
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.1e-21 106.3 77 67.5
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 6.9e-21 105.1 95 65.3
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 6.9e-21 105.1 114 60.5
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 1.5e-20 104.0 88 65.9
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.6e-20 103.2 59 78.0
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.4e-20 102.8 77 64.9
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.7e-19 100.5 53 90.6
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-19 100.1 110 56.4
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 3.8e-19 99.4 62 87.1
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-19 99.0 115 60.0
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 6.5e-19 98.6 70 68.6
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.5e-19 98.2 62 87.1
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-18 97.8 53 79.2
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.2e-18 96.3 71 63.4
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.6e-17 92.8 66 72.7
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 3.9e-16 89.4 141 50.4
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-15 87.4 85 58.8
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.3e-15 86.3 76 61.8
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 4.3e-15 85.9 44 81.8
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.2e-14 83.6 85 56.5
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 6.9e-13 78.6 40 95.0
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 1.2e-12 77.8 68 61.8
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.2e-12 77.8 68 60.3
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.6e-12 76.6 41 82.9
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.9e-12 75.5 87 60.9
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.9e-11 73.2 110 45.5
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 2.1e-09 67.0 48 66.7
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 1.8e-08 63.9 49 69.4
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 7.4e-07 58.5 42 76.2


User provided reference genes

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