Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G798.19 Capsicum annuum HOM05D002694 ORTHO05D002927 7.9e-53 210.3 116 100.0
Solyc01g103990.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 7.9e-45 183.7 113 85.8
PGSC0003DMG400023771 Solanum tuberosum HOM05D002694 ORTHO05D002927 2.3e-44 182.2 113 85.8
Sopen01g046390 Solanum pennellii HOM05D002694 ORTHO05D002927 3.0e-44 181.8 113 85.8
Peaxi162Scf00011g00627 Petunia axillaris HOM05D002694 ORTHO05D002927 5.0e-39 164.5 115 78.3
CSS0021439 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 7.2e-30 134.0 107 69.2
CSS0029367 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 7.2e-30 134.0 107 69.2
Dinv19385 Davidia involucrata HOM05D002694 ORTHO05D002927 2.7e-29 132.1 107 69.2
DCAR_006697 Daucus carota HOM05D002694 ORTHO05D002927 4.7e-29 131.3 112 64.3
vmacro01749 Vaccinium macrocarpon HOM05D002694 ORTHO05D002927 5.2e-28 127.9 107 65.4
Oeu036664.1 Olea europaea HOM05D002694 ORTHO05D002927 2.6e-27 125.6 109 65.1
Cc02_g22740 Coffea canephora HOM05D002694 ORTHO05D002927 4.4e-27 124.8 112 60.7
SGA_v2.0_scaffold92G28183 Striga asiatica HOM05D002694 ORTHO05D002927 5.7e-27 124.4 108 65.7
CSS0003662 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 1.7e-26 122.9 107 64.5
SGA_v2.0_scaffold11G05950 Striga asiatica HOM05D002694 ORTHO05D002927 3.7e-26 121.7 108 64.8
Oeu000112.1 Olea europaea HOM05D002694 ORTHO05D002927 8.2e-26 120.6 112 59.8
MSTRG.5220 Avicennia marina HOM05D002694 ORTHO05D002927 1.4e-25 119.8 108 62.0
Migut.N01049 Erythranthe guttata HOM05D002694 ORTHO05D002927 1.4e-25 119.8 112 61.6
Actinidia00199 Actinidia chinensis HOM05D002694 ORTHO05D002927 3.1e-25 118.6 111 61.3
Rhsim11G0127700 Rhododendron simsii HOM05D002694 ORTHO05D002927 2.6e-24 115.5 113 58.4
unitig_699.g19869 Utricularia gibba HOM05D002694 ORTHO05D002927 4.5e-24 114.8 112 58.9
Atru.chr3.1571 Acer truncatum HOM05D002694 ORTHO05D002927 1.0e-23 113.6 110 60.0
Atru.chr3.1590 Acer truncatum HOM05D002694 ORTHO05D002927 1.0e-23 113.6 110 60.0
SalBow6G7198 Salvia bowleyana HOM05D002694 ORTHO05D002927 1.0e-23 113.6 122 57.4
Manes.07G019200 Manihot esculenta HOM05D002694 ORTHO05D002927 1.3e-23 113.2 109 60.6
HanXRQChr10g0298121 Helianthus annuus HOM05D002694 ORTHO05D002927 2.2e-23 112.5 109 63.3
GSVIVG01022838001 Vitis vinifera HOM05D002694 ORTHO05D002927 5.0e-23 111.3 107 59.8
Lj5A254T86 Lonicera japonica HOM05D002694 ORTHO05D002927 6.5e-23 110.9 99 64.6
Nitab4.5_0008546g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 6.5e-23 110.9 67 88.1
MSTRG.27847 Avicennia marina HOM05D002694 ORTHO05D002927 1.5e-22 109.8 108 60.2
Lsat_1_v5_gn_5_105680 Lactuca sativa HOM05D002694 ORTHO05D002927 1.9e-22 109.4 113 59.3
arahy.Tifrunner.gnm1.ann1.LAND87 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.2e-22 108.6 109 58.7
arahy.Tifrunner.gnm1.ann1.YNH2A3 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.2e-22 108.6 110 58.2
CiPaw.05G049600 Carya illinoinensis HOM05D002694 ORTHO05D002927 4.2e-22 108.2 105 56.2
Nitab4.5_0001744g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 5.5e-22 107.8 68 88.2
TWI23G0063 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 9.4e-22 107.1 110 58.2
TAR376G0808 Trochodendron aralioides HOM05D002694 ORTHO05D002927 9.4e-22 107.1 107 56.1
Glyma.08G188000 Glycine max HOM05D002694 ORTHO05D002927 1.2e-21 106.7 109 57.8
Ah.05g178600 Amaranthus hybridus HOM05D002694 ORTHO05D002927 1.6e-21 106.3 111 55.0
ECA234G0155 Erigeron canadensis HOM05D002694 ORTHO05D002927 1.6e-21 106.3 113 58.4
Glyma.12G170100 Glycine max HOM05D002694 ORTHO05D002927 2.1e-21 105.9 109 56.9
Psat1g222080 Pisum sativum HOM05D002694 ORTHO05D002927 2.1e-21 105.9 101 57.4
Potri.004G217800 Populus trichocarpa HOM05D002694 ORTHO05D002927 2.7e-21 105.5 106 57.5
TWI59G0386 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 2.7e-21 105.5 110 57.3
Potri.003G018500 Populus trichocarpa HOM05D002694 ORTHO05D002927 3.6e-21 105.1 106 57.5
Sabra01G0163900 Salix brachista HOM05D002694 ORTHO05D002927 6.1e-21 104.4 106 57.5
TAR628G0910 Trochodendron aralioides HOM05D002694 ORTHO05D002927 8.0e-21 104.0 107 56.1
Nn5g27493 Nelumbo nucifera HOM05D002694 ORTHO05D002927 1.4e-20 103.2 110 53.6
Eucgr.I02740 Eucalyptus grandis HOM05D002694 ORTHO05D002927 1.8e-20 102.8 109 53.2
MBI06_g17221_MAGBIO Magnolia biondii HOM05D002694 ORTHO05D002927 1.8e-20 102.8 109 59.6
PGR142G3862 Punica granatum HOM05D002694 ORTHO05D002927 1.8e-20 102.8 100 60.0
MD08G1236100 Malus domestica HOM05D002694 ORTHO05D002927 3.0e-20 102.1 99 56.6
TPR.G2128 Trifolium pratense HOM05D002694 ORTHO05D002927 3.0e-20 102.1 107 57.0
Nn1g08357 Nelumbo nucifera HOM05D002694 ORTHO05D002927 4.0e-20 101.7 110 54.5
HanXRQChr16g0513871 Helianthus annuus HOM05D002694 ORTHO05D002927 5.2e-20 101.3 113 56.6
QL02p099401 Quercus lobata HOM05D002694 ORTHO05D002927 5.2e-20 101.3 102 54.9
VMungo0540G2271 Vigna mungo HOM05D002694 ORTHO05D002927 8.8e-20 100.5 98 58.2
Medtr2g006520 Medicago truncatula HOM05D002694 ORTHO05D002927 1.2e-19 100.1 107 56.1
GSVIVG01026090001 Vitis vinifera HOM05D002694 ORTHO05D002927 1.2e-19 100.1 108 55.6
EL10Ac1g00138 Beta vulgaris HOM05D002694 ORTHO05D002927 1.5e-19 99.8 106 53.8
Lj6g0015845 Lotus japonicus HOM05D002694 ORTHO05D002927 1.5e-19 99.8 109 56.0
MD15G1428100 Malus domestica HOM05D002694 ORTHO05D002927 1.5e-19 99.8 99 56.6
Prupe.1G572800 Prunus persica HOM05D002694 ORTHO05D002927 2.6e-19 99.0 100 57.0
Sed0018888 Sechium edule HOM05D002694 ORTHO05D002927 2.6e-19 99.0 112 54.5
Lj9A303T74 Lonicera japonica HOM05D002694 ORTHO05D002927 3.4e-19 98.6 109 56.9
Gohir.D13G034000 Gossypium hirsutum HOM05D002694 ORTHO05D002927 5.7e-19 97.8 109 56.0
Gorai.013G038500 Gossypium raimondii HOM05D002694 ORTHO05D002927 5.7e-19 97.8 109 56.0
COL.COLO4_11774 Corchorus olitorius HOM05D002694 ORTHO05D002927 9.7e-19 97.1 109 53.2
Cpa.g.sc31.40 Carica papaya HOM05D002694 ORTHO05D002927 1.3e-18 96.7 107 52.3
Ciclev10000069m.g Citrus clementina HOM05D002694 ORTHO05D002927 1.7e-18 96.3 116 50.9
FAN13G1292 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.7e-18 96.3 104 53.8
Hma1.2p1_1197F.1_g266170 Hydrangea macrophylla HOM05D002694 ORTHO05D002927 2.2e-18 95.9 107 57.0
BcaB01g01389 Brassica carinata HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 55.2
BcaC04g20963 Brassica carinata HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 56.2
C09p37480 Brassica napus HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 56.2
BolC9t56579H Brassica oleracea HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 56.2
AUR62004598 Chenopodium quinoa HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 51.4
AUR62023546 Chenopodium quinoa HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 53.3
Hund27116 Selenicereus undatus HOM05D002694 ORTHO05D002927 2.8e-18 95.5 105 55.2
Phvul.006G216100 Phaseolus vulgaris HOM05D002694 ORTHO05D002927 4.8e-18 94.7 98 55.1
Sabra03G0010100 Salix brachista HOM05D002694 ORTHO05D002927 6.3e-18 94.4 106 52.8
Haze_01743 Corylus avellana HOM05D002694 ORTHO05D002927 8.3e-18 94.0 107 51.4
FAN08G2300 Fragaria x ananassa HOM05D002694 ORTHO05D002927 8.3e-18 94.0 104 52.9
Gohir.A13G035700 Gossypium hirsutum HOM05D002694 ORTHO05D002927 8.3e-18 94.0 109 55.0
CANSAT11G2158 Cannabis sativa HOM05D002694 ORTHO05D002927 2.4e-17 92.4 98 54.1
A09p29540 Brassica napus HOM05D002694 ORTHO05D002927 3.1e-17 92.0 105 52.4
BraA09t38524Z Brassica rapa HOM05D002694 ORTHO05D002927 3.1e-17 92.0 105 52.4
PSO170G3020 Papaver somniferum HOM05D002694 ORTHO05D002927 4.1e-17 91.7 100 48.0
PSO782G4887 Papaver somniferum HOM05D002694 ORTHO05D002927 4.1e-17 91.7 108 45.4
RcHm_v2.0_Chr7g0221251 Rosa chinensis HOM05D002694 ORTHO05D002927 4.1e-17 91.7 103 51.5
FAN04G2388 Fragaria x ananassa HOM05D002694 ORTHO05D002927 5.3e-17 91.3 104 51.9
Carub.0006s2773 Capsella rubella HOM05D002694 ORTHO05D002927 1.2e-16 90.1 105 53.3
AL6G42880 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 1.6e-16 89.7 105 53.3
CARHR260210 Cardamine hirsuta HOM05D002694 ORTHO05D002927 2.0e-16 89.4 104 52.9
Gohir.A03G193100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 3.5e-16 88.6 109 50.5
Lj9A303T75 Lonicera japonica HOM05D002694 ORTHO05D002927 3.5e-16 88.6 108 57.4
Lalb_Chr15g0090681 Lupinus albus HOM05D002694 ORTHO05D002927 3.5e-16 88.6 102 52.0
THA.LOC104813107 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 3.5e-16 88.6 100 55.0
Lalb_Chr20g0123581 Lupinus albus HOM05D002694 ORTHO05D002927 4.5e-16 88.2 99 54.5
Aa31LG9G14770 Aethionema arabicum HOM05D002694 ORTHO05D002927 5.9e-16 87.8 104 51.9
AT4G09150 Arabidopsis thaliana HOM05D002694 ORTHO05D002927 5.9e-16 87.8 105 52.4
THA.LOC104816530 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 5.9e-16 87.8 99 51.5
Cfa005502 Carpinus fangiana HOM05D002694 ORTHO05D002927 1.3e-15 86.7 100 52.0
Gorai.005G242000 Gossypium raimondii HOM05D002694 ORTHO05D002927 1.3e-15 86.7 109 49.5
Os04g0439100 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 2.9e-15 85.5 96 54.2
Actinidia39026 Actinidia chinensis HOM05D002694 ORTHO05D002927 6.5e-15 84.3 81 60.5
PSO170G0717 Papaver somniferum HOM05D002694 ORTHO05D002927 1.1e-14 83.6 109 41.3
HPP92_005674 Vanilla planifolia HOM05D002694 ORTHO05D002927 1.1e-14 83.6 107 46.7
Sc01g0002010 Simmondsia chinensis HOM05D002694 ORTHO05D002927 5.5e-14 81.3 101 48.5
Aqoxy5G02647 Aquilegia oxysepala HOM05D002694 ORTHO05D002927 2.7e-13 79.0 115 47.0
ClCG09G014070 Citrullus lanatus HOM05D002694 ORTHO05D002927 2.7e-13 79.0 62 69.4
Lsat_1_v5_gn_9_121061 Lactuca sativa HOM05D002694 ORTHO05D002927 2.7e-13 79.0 92 53.3
PSO017G2635 Papaver somniferum HOM05D002694 ORTHO05D002927 2.7e-13 79.0 109 40.4
CAN.G308.29 Capsicum annuum HOM05D002694 ORTHO05D002927 3.6e-13 78.6 105 44.8
AagrBONN_evm.TU.Sc2ySwM_344.4070 Anthoceros agrestis HOM05D002694 ORTHO05D002927 4.7e-13 78.2 102 50.0
Sp6g08390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 8.0e-13 77.4 105 49.5
Aa31LG7G6940 Aethionema arabicum HOM05D002694 ORTHO05D002927 1.0e-12 77.0 103 44.7
Zm00001eb082280 Zea mays HOM05D002694 ORTHO05D002927 1.4e-12 76.6 98 50.0
Thhalv10028375m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 1.8e-12 76.3 104 48.1
Lalb_Chr07g0185771 Lupinus albus HOM05D002694 ORTHO05D002927 3.0e-12 75.5 98 50.0
Mapoly0114s0005 Marchantia polymorpha HOM05D002694 ORTHO05D002927 5.2e-12 74.7 104 44.2
Sopen06g023430 Solanum pennellii HOM05D002694 ORTHO05D002927 5.2e-12 74.7 110 43.6
ATR0697G050 Amborella trichopoda HOM05D002694 ORTHO05D002927 6.8e-12 74.3 107 43.9
CsaV3_6G037510 Cucumis sativus L. HOM05D002694 ORTHO05D002927 8.8e-12 73.9 77 59.7
FvH4_5g28950 Fragaria vesca HOM05D002694 ORTHO05D002927 8.8e-12 73.9 104 45.2
Potri.013G105300 Populus trichocarpa HOM05D002694 ORTHO05D002927 1.5e-11 73.2 114 45.6
CDE06G1701 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 2.0e-11 72.8 78 52.6
CDE08G0876 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 2.0e-11 72.8 108 43.5
Nitab4.5_0004970g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 5.7e-11 71.2 111 42.3
FAN18G4351 Fragaria x ananassa HOM05D002694 ORTHO05D002927 7.5e-11 70.9 104 44.2
Sabra13G0091000 Salix brachista HOM05D002694 ORTHO05D002927 7.5e-11 70.9 110 43.6
Duzib132G0043 Durio zibethinus HOM05D002694 ORTHO05D002927 9.8e-11 70.5 78 57.7
MELO3C014361.2 Cucumis melo HOM05D002694 ORTHO05D002927 2.2e-10 69.3 62 64.5
Sabra01G0164800 Salix brachista HOM05D002694 ORTHO05D002927 2.2e-10 69.3 113 46.0
CANSAT21G0955 Cannabis sativa HOM05D002694 ORTHO05D002927 3.7e-10 68.6 107 46.7
TWI14G0195 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 8.3e-10 67.4 109 45.0
Thhalv10006618m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 1.1e-09 67.0 103 46.6
CARHR023310 Cardamine hirsuta HOM05D002694 ORTHO05D002927 2.4e-09 65.9 96 49.0
Thecc.02G089100 Theobroma cacao HOM05D002694 ORTHO05D002927 2.4e-09 65.9 78 55.1
Hma1.2p1_1197F.1_g266140 Hydrangea macrophylla HOM05D002694 ORTHO05D002927 3.1e-09 65.5 84 51.2
Os02g0556700 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 4.1e-09 65.1 110 43.6
Sp1g20390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 5.4e-09 64.7 103 48.5
Carub.0001s2243 Capsella rubella HOM05D002694 ORTHO05D002927 7.0e-09 64.3 104 44.2
AL1G36490 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 9.1e-09 63.9 98 42.9
Pp3c19_2580 Physcomitrium patens HOM05D002694 ORTHO05D002927 9.1e-09 63.9 98 44.9
AT1G22930 Arabidopsis thaliana HOM05D002694 ORTHO05D002927 1.6e-08 63.2 80 52.5
BcaC05g26199 Brassica carinata HOM05D002694 ORTHO05D002927 1.6e-08 63.2 104 44.2
C05p22070 Brassica napus HOM05D002694 ORTHO05D002927 1.6e-08 63.2 104 44.2
BolC5t30903H Brassica oleracea HOM05D002694 ORTHO05D002927 1.6e-08 63.2 104 44.2
Duzib052G0561 Durio zibethinus HOM05D002694 ORTHO05D002927 2.0e-08 62.8 78 51.3
ECA240G4585 Erigeron canadensis HOM05D002694 ORTHO05D002927 2.0e-08 62.8 95 48.4
SMO271G0127 Selaginella moellendorffii HOM05D002694 ORTHO05D002927 2.0e-08 62.8 109 37.6
Pp3c19_2560 Physcomitrium patens HOM05D002694 ORTHO05D002927 2.7e-08 62.4 99 42.4
A09p41810 Brassica napus HOM05D002694 ORTHO05D002927 3.5e-08 62.0 96 47.9
BcaB07g32290 Brassica carinata HOM05D002694 ORTHO05D002927 4.5e-08 61.6 96 46.9
BraA09t39670Z Brassica rapa HOM05D002694 ORTHO05D002927 1.3e-07 60.1 96 46.9
Sed0009071 Sechium edule HOM05D002694 ORTHO05D002927 1.3e-07 60.1 64 54.7


User provided reference genes

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