Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 0.0e+00 1243.0 628 100.0
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1160.2 616 93.5
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1159.8 616 93.5
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1133.6 616 91.6
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 5.7e-299 1030.4 617 81.7
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 9.8e-299 1029.6 619 82.1
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 1.1e-297 1026.2 617 82.5
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 1.8e-297 1025.4 613 82.9
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 4.1e-297 1024.2 626 80.0
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.2e-296 1022.7 616 81.5
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 2.0e-296 1021.9 641 79.3
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 1.3e-295 1019.2 617 81.4
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 1.3e-295 1019.2 616 81.3
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 1.1e-294 1016.1 627 80.2
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 2.1e-293 1011.9 616 81.5
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 2.1e-293 1011.9 616 79.1
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 2.8e-293 1011.5 597 82.1
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 3.6e-293 1011.1 616 80.2
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 4.7e-293 1010.7 619 80.3
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 6.2e-293 1010.4 616 80.7
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 1.4e-292 1009.2 617 80.4
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 6.8e-292 1006.9 616 80.5
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 1.5e-291 1005.7 616 79.7
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 2.0e-291 1005.4 616 81.2
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 2.6e-291 1005.0 616 80.0
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 7.5e-291 1003.4 619 80.0
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 7.5e-291 1003.4 617 80.1
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.8e-291 1003.0 619 79.2
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 1.3e-290 1002.7 617 80.6
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 2.2e-290 1001.9 616 80.8
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 2.9e-290 1001.5 617 80.6
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 6.4e-290 1000.3 617 79.7
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 6.4e-290 1000.3 617 79.7
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.1e-289 999.6 619 79.2
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 4.1e-289 997.7 624 78.4
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 9.2e-289 996.5 593 82.0
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 1.2e-288 996.1 622 79.9
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 2.0e-288 995.3 617 80.1
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 1.7e-287 992.3 616 80.0
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.0e-287 991.5 649 76.7
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 2.5e-286 988.4 616 79.2
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 5.6e-286 987.3 624 78.5
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 5.6e-286 987.3 651 75.4
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.2e-285 986.1 618 79.0
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 3.6e-285 984.6 625 78.2
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 4.7e-285 984.2 616 78.7
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 8.1e-285 983.4 622 78.6
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 1.1e-284 983.0 616 78.4
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 3.1e-284 981.5 626 77.8
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 3.1e-284 981.5 626 77.8
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 3.1e-284 981.5 627 77.2
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 3.1e-284 981.5 645 76.1
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 5.2e-284 980.7 617 78.6
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 5.2e-284 980.7 621 77.8
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 8.9e-284 979.9 623 78.2
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 2.0e-283 978.8 616 78.6
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 2.0e-283 978.8 616 77.1
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 7.5e-283 976.9 628 77.2
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.2e-282 975.3 617 77.3
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 2.9e-282 974.9 713 70.0
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 3.7e-282 974.5 622 77.7
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 3.7e-282 974.5 625 77.8
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 4.9e-282 974.2 616 78.2
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 4.9e-282 974.2 621 77.6
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 8.3e-282 973.4 638 76.0
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 1.4e-281 972.6 616 77.9
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 1.9e-281 972.2 620 78.1
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 1.9e-281 972.2 622 78.5
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 4.1e-281 971.1 617 78.0
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 5.4e-281 970.7 617 77.1
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 5.4e-281 970.7 619 77.5
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 7.1e-281 970.3 616 77.4
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 1.2e-280 969.5 617 78.1
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 1.6e-280 969.1 617 77.5
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 1.6e-280 969.1 617 77.6
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 2.7e-280 968.4 617 77.8
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 7.8e-280 966.8 616 77.6
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 6.6e-279 963.8 619 77.5
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 9.5e-278 959.9 645 74.6
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 6.2e-277 957.2 617 78.0
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 7.6e-275 950.3 622 76.7
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 3.8e-274 948.0 617 76.0
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 4.9e-274 947.6 616 75.8
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 3.2e-273 944.9 646 73.4
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 1.3e-271 939.5 615 75.0
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 1.3e-271 939.5 616 77.6
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 1.1e-270 936.4 620 75.6
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 2.0e-267 925.6 609 74.9
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 1.1e-265 919.8 617 74.7
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 1.4e-265 919.5 616 73.5
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 4.2e-265 917.9 629 73.4
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-253 879.4 550 79.8
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 3.7e-253 878.2 618 72.3
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 6.9e-252 874.0 563 75.1
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 2.5e-246 855.5 617 70.2
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 6.2e-245 850.9 630 67.6
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.2e-241 838.2 522 79.7
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 6.0e-240 834.3 616 69.5
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 1.9e-238 829.3 625 67.4
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 2.5e-238 828.9 609 67.5
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 4.3e-238 828.2 501 80.6
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 5.9e-235 817.8 505 79.2
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 2.7e-232 808.9 624 64.6
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 7.4e-214 747.7 649 59.5
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 7.0e-212 741.1 616 65.4
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 2.0e-195 686.4 617 60.9
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 6.3e-189 664.8 401 82.3
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 2.3e-183 646.4 472 70.6
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 5.4e-180 635.2 618 59.4
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 2.7e-171 606.3 601 54.6
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.2e-157 560.1 333 79.9
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.4e-156 557.4 626 48.1
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 2.3e-146 523.5 296 84.8
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.3e-141 507.7 296 80.7
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.1e-140 504.6 627 45.1
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.5e-134 484.2 255 89.8
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 7.9e-123 445.3 263 80.6
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 3.4e-118 429.9 247 81.8
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 8.5e-117 425.2 310 68.4
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 5.5e-116 422.5 287 73.5
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.7e-107 392.9 246 78.5
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.0e-102 377.5 266 71.4
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 3.3e-97 360.1 302 63.6
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 9.4e-92 342.0 293 60.8
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 5.0e-85 319.7 487 39.0
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 9.1e-79 298.9 182 78.0
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 3.1e-66 257.3 220 62.7
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 5.4e-47 193.4 103 87.4
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 1.3e-40 172.2 112 74.1
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-39 168.3 85 89.4
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.2e-38 165.6 112 70.5
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 8.7e-37 159.5 111 72.1
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.1e-36 159.1 112 68.8
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 3.3e-36 157.5 80 87.5
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 2.4e-34 151.4 121 64.5
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 5.8e-33 146.7 101 74.3
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 4.8e-27 127.1 93 68.8
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 4.9e-24 117.1 60 83.3
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 1.2e-22 112.5 53 90.6
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 2.6e-17 94.7 66 65.2
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 2.2e-16 91.7 57 73.7
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 8.4e-16 89.7 48 81.2
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 1.4e-10 72.4 36 83.3
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 6.5e-08 63.5 31 83.9
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 6.5e-08 63.5 31 83.9
Cpa.g.sc791.3 Carica papaya HOM05D003697 ORTHO05D005452 5.5e-07 60.5 80 51.2
Medtr1g089820 Medicago truncatula HOM05D000488 ORTHO05D000347 1.2e-06 59.3 191 27.7


User provided reference genes

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