Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G794.7 Capsicum annuum HOM05D000686 ORTHO05D000512 9.0e-41 169.9 88 100.0
Nitab4.5_0000500g0040 Nicotiana tabacum HOM05D000686 ORTHO05D000512 1.2e-16 89.7 65 69.2
CAN.G761.22 Capsicum annuum HOM05D000686 ORTHO05D000512 3.4e-16 88.2 65 67.7
Sopen08g026550 Solanum pennellii HOM05D000686 ORTHO05D000512 4.5e-16 87.8 65 67.7
PGSC0003DMG400026225 Solanum tuberosum HOM05D000686 ORTHO05D000512 4.5e-16 87.8 65 66.2
Nitab4.5_0009955g0050 Nicotiana tabacum HOM05D000686 ORTHO05D000512 3.8e-15 84.7 65 64.6
Peaxi162Scf00446g00413 Petunia axillaris HOM05D000686 ORTHO05D000512 1.9e-14 82.4 65 63.1
Peaxi162Scf00190g01010 Petunia axillaris HOM05D000686 ORTHO05D000512 2.1e-13 79.0 60 63.3
Solyc06g060880.4 Solanum lycopersicum HOM05D000686 ORTHO05D000512 1.0e-12 76.6 60 63.3
Sopen06g021030 Solanum pennellii HOM05D000686 ORTHO05D000512 1.0e-12 76.6 60 63.3
CAN.G62.6 Capsicum annuum HOM05D000686 ORTHO05D000512 1.4e-12 76.3 60 63.3
PGSC0003DMG400024161 Solanum tuberosum HOM05D000686 ORTHO05D000512 1.8e-12 75.9 60 61.7
Psat2g176360 Pisum sativum HOM05D000686 ORTHO05D000512 1.5e-11 72.8 60 56.7
Phvul.002G000800 Phaseolus vulgaris HOM05D000686 ORTHO05D000512 2.0e-11 72.4 60 56.7
VMungo1215G0404 Vigna mungo HOM05D000686 ORTHO05D000512 2.0e-11 72.4 60 56.7
Oeu040682.1 Olea europaea HOM05D000686 ORTHO05D000512 2.5e-11 72.0 65 55.4
Ca_24603_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 7.4e-11 70.5 60 56.7
Glyma.01G205700 Glycine max HOM05D000686 ORTHO05D000512 7.4e-11 70.5 60 55.0
Manes.02G043700 Manihot esculenta HOM05D000686 ORTHO05D000512 1.3e-10 69.7 60 55.0
Ah.12g054110 Amaranthus hybridus HOM05D000686 ORTHO05D000512 1.7e-10 69.3 60 55.0
CSS0000711 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 1.7e-10 69.3 62 54.8
Oeu040681.1 Olea europaea HOM05D000686 ORTHO05D000512 1.7e-10 69.3 65 52.3
QL12p009505 Quercus lobata HOM05D000686 ORTHO05D000512 1.7e-10 69.3 60 53.3
Cc08_g11580 Coffea canephora HOM05D000686 ORTHO05D000512 2.2e-10 68.9 60 53.3
Lalb_Chr05g0214271 Lupinus albus HOM05D000686 ORTHO05D000512 2.2e-10 68.9 60 55.0
Nitab4.5_0003456g0020 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.2e-10 68.9 60 56.7
Gohir.D03G167100 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.8e-10 68.6 60 55.0
Duzib205G2048 Durio zibethinus HOM05D000686 ORTHO05D000512 3.7e-10 68.2 60 53.3
Medtr5g013250 Medicago truncatula HOM05D000686 ORTHO05D000512 3.7e-10 68.2 60 53.3
Aqoxy3G02704 Aquilegia oxysepala HOM05D000686 ORTHO05D000512 4.8e-10 67.8 60 51.7
Hund14500 Selenicereus undatus HOM05D000686 ORTHO05D000512 4.8e-10 67.8 60 53.3
vmacro00040 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 4.8e-10 67.8 60 51.7
arahy.Tifrunner.gnm1.ann1.C7YTVY Arachis hypogaea HOM05D000686 ORTHO05D000512 6.3e-10 67.4 62 54.8
arahy.Tifrunner.gnm1.ann1.CG01M5 Arachis hypogaea HOM05D000686 ORTHO05D000512 6.3e-10 67.4 62 54.8
A04p27120 Brassica napus HOM05D000686 ORTHO05D000512 6.3e-10 67.4 60 58.3
C04p64630 Brassica napus HOM05D000686 ORTHO05D000512 6.3e-10 67.4 60 58.3
BolC4t27940H Brassica oleracea HOM05D000686 ORTHO05D000512 6.3e-10 67.4 60 58.3
BraA04t18211Z Brassica rapa HOM05D000686 ORTHO05D000512 6.3e-10 67.4 60 58.3
DCAR_000648 Daucus carota HOM05D000686 ORTHO05D000512 6.3e-10 67.4 60 53.3
Gorai.003G176700 Gossypium raimondii HOM05D000686 ORTHO05D000512 6.3e-10 67.4 60 53.3
EL10Ac5g12295 Beta vulgaris HOM05D000686 ORTHO05D000512 8.2e-10 67.0 60 51.7
Gohir.A03G005400 Gossypium hirsutum HOM05D000686 ORTHO05D000512 8.2e-10 67.0 60 53.3
Sed0027272 Sechium edule HOM05D000686 ORTHO05D000512 8.2e-10 67.0 60 53.3
TPR.G31435 Trifolium pratense HOM05D000686 ORTHO05D000512 8.2e-10 67.0 60 53.3
arahy.Tifrunner.gnm1.ann1.E23R5P Arachis hypogaea HOM05D000437 ORTHO05D000512 1.1e-09 66.6 61 57.4
CiPaw.12G047800 Carya illinoinensis HOM05D000686 ORTHO05D000512 1.1e-09 66.6 60 51.7
Gorai.003G176900 Gossypium raimondii HOM05D000686 ORTHO05D000512 1.1e-09 66.6 60 53.3
Actinidia25900 Actinidia chinensis HOM05D000686 ORTHO05D000512 1.4e-09 66.2 60 51.7
Hund11330 Selenicereus undatus HOM05D000686 ORTHO05D000512 1.4e-09 66.2 60 51.7
TAR629G0790 Trochodendron aralioides HOM05D000686 ORTHO05D000512 1.4e-09 66.2 60 50.0
AL4G31740 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 1.8e-09 65.9 60 56.7
AUR62007148 Chenopodium quinoa HOM05D000686 ORTHO05D000512 1.8e-09 65.9 60 51.7
Sp4g17910 Schrenkiella parvula HOM05D000686 ORTHO05D000512 1.8e-09 65.9 60 56.7
GSVIVG01007345001 Vitis vinifera HOM05D000686 ORTHO05D000512 1.8e-09 65.9 60 53.3
arahy.Tifrunner.gnm1.ann1.SMB1PG Arachis hypogaea HOM05D000686 ORTHO05D000512 2.4e-09 65.5 61 55.7
Thhalv10016655m.g Eutrema salsugineum HOM05D000686 ORTHO05D000512 2.4e-09 65.5 60 56.7
Nitab4.5_0000506g0060 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.4e-09 65.5 60 53.3
Rhsim04G0160100 Rhododendron simsii HOM05D000686 ORTHO05D000512 2.4e-09 65.5 60 51.7
BcaB06g28859 Brassica carinata HOM05D000686 ORTHO05D000512 3.1e-09 65.1 60 56.7
Carub.0004s1738 Capsella rubella HOM05D000686 ORTHO05D000512 3.1e-09 65.1 60 55.0
COL.COLO4_21680 Corchorus olitorius HOM05D000686 ORTHO05D000512 3.1e-09 65.1 60 51.7
MD06G1049200 Malus domestica HOM05D000686 ORTHO05D000512 3.1e-09 65.1 60 51.7
SalBow6G2722 Salvia bowleyana HOM05D000686 ORTHO05D000512 3.1e-09 65.1 60 51.7
Sc01g0008140 Simmondsia chinensis HOM05D000686 ORTHO05D000512 3.1e-09 65.1 60 48.3
AT2G35660 Arabidopsis thaliana HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 56.7
Migut.A01046 Erythranthe guttata HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 46.7
Eucgr.D02120 Eucalyptus grandis HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 53.3
FvH4_5g20080 Fragaria vesca HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 48.3
FAN13G3177 Fragaria x ananassa HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 48.3
FAN18G0455 Fragaria x ananassa HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 48.3
Medtr5g013260 Medicago truncatula HOM05D000686 ORTHO05D000512 4.1e-09 64.7 66 50.0
Sabra01G0122600 Salix brachista HOM05D000686 ORTHO05D000512 4.1e-09 64.7 60 51.7
vmacro00039 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 4.1e-09 64.7 62 50.0
CANSAT01G0633 Cannabis sativa HOM05D000686 ORTHO05D000512 5.3e-09 64.3 62 51.6
CARHR129900 Cardamine hirsuta HOM05D000686 ORTHO05D000512 5.3e-09 64.3 60 55.0
FAN04G0337 Fragaria x ananassa HOM05D000686 ORTHO05D000512 5.3e-09 64.3 60 48.3
Sc01g0008120 Simmondsia chinensis HOM05D000686 ORTHO05D000512 5.3e-09 64.3 62 46.8
Sc01g0008130 Simmondsia chinensis HOM05D000686 ORTHO05D000512 5.3e-09 64.3 60 46.7
AL4G24500 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 6.9e-09 63.9 60 55.0
Prupe.5G059700 Prunus persica HOM05D000686 ORTHO05D000512 6.9e-09 63.9 60 51.7
SGA_v2.0_scaffold199G41238 Striga asiatica HOM05D000686 ORTHO05D000512 6.9e-09 63.9 60 50.0
Thecc.03G243700 Theobroma cacao HOM05D000686 ORTHO05D000512 6.9e-09 63.9 60 48.3
unitig_61.g26180 Utricularia gibba HOM05D000686 ORTHO05D000512 6.9e-09 63.9 60 48.3
Aa31LG9G15080 Aethionema arabicum HOM05D000686 ORTHO05D000512 9.1e-09 63.5 60 53.3
Potri.001G152600 Populus trichocarpa HOM05D000686 ORTHO05D000512 9.1e-09 63.5 60 51.7
THA.LOC104812767 Tarenaya hassleriana HOM05D000686 ORTHO05D000512 9.1e-09 63.5 60 55.0
AT2G29720 Arabidopsis thaliana HOM05D000686 ORTHO05D000512 1.2e-08 63.2 60 53.3
Dinv28855 Davidia involucrata HOM05D000686 ORTHO05D000512 1.2e-08 63.2 61 50.8
TWI15G0407 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 1.2e-08 63.2 60 50.0
Cfa012666 Carpinus fangiana HOM05D000686 ORTHO05D000512 1.5e-08 62.8 60 48.3
FAN08G2277 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.5e-08 62.8 60 46.7
RcHm_v2.0_Chr7g0204941 Rosa chinensis HOM05D000686 ORTHO05D000512 1.5e-08 62.8 60 46.7
Atru.chr9.1233 Acer truncatum HOM05D000686 ORTHO05D000512 2.0e-08 62.4 60 50.0
Ciclev10020057m.g Citrus clementina HOM05D000686 ORTHO05D000512 2.0e-08 62.4 60 50.0
Haze_07980 Corylus avellana HOM05D000686 ORTHO05D000512 2.0e-08 62.4 60 48.3
CsaV3_3G049870 Cucumis sativus L. HOM05D000686 ORTHO05D000512 2.0e-08 62.4 62 50.0
Lj2g0021300 Lotus japonicus HOM05D000686 ORTHO05D000512 2.0e-08 62.4 61 55.7
AUR62018863 Chenopodium quinoa HOM05D000686 ORTHO05D000512 2.6e-08 62.0 60 50.0
ClCG09G012810 Citrullus lanatus HOM05D000686 ORTHO05D000512 2.6e-08 62.0 62 50.0
ECA233G5134 Erigeron canadensis HOM05D001352 ORTHO05D001354 3.4e-08 61.6 60 46.7
ECA236G2309 Erigeron canadensis HOM05D003235 ORTHO05D000512 3.4e-08 61.6 60 46.7
MELO3C000537.2 Cucumis melo HOM05D000686 ORTHO05D000512 4.5e-08 61.2 62 50.0
Lsat_1_v5_gn_6_67421 Lactuca sativa HOM05D000686 ORTHO05D000512 5.9e-08 60.8 60 48.3
Nn6g33809 Nelumbo nucifera HOM05D000686 ORTHO05D000512 5.9e-08 60.8 60 46.7
PSO063G4467 Papaver somniferum HOM05D000686 ORTHO05D000512 5.9e-08 60.8 60 46.7
HanXRQChr16g0510671 Helianthus annuus HOM05D000686 ORTHO05D000512 7.7e-08 60.5 60 45.0
MBI04_g28365_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 1.0e-07 60.1 60 51.7
HPP92_020918 Vanilla planifolia HOM05D000686 ORTHO05D000512 1.3e-07 59.7 62 51.6
COL.COLO4_21679 Corchorus olitorius HOM05D000686 ORTHO05D000512 1.7e-07 59.3 62 46.8
SEGI_29866 Sequoiadendron giganteum HOM05D000686 ORTHO05D000512 1.7e-07 59.3 63 44.4
Lj8A275T75 Lonicera japonica HOM05D000686 ORTHO05D000512 2.2e-07 58.9 61 49.2
PGR031G0940 Punica granatum HOM05D000686 ORTHO05D000512 2.9e-07 58.5 88 43.2
CDE04G1593 Ceratophyllum demersum HOM05D000686 ORTHO05D000512 6.5e-07 57.4 60 43.3
MD04G1050600 Malus domestica HOM05D000686 ORTHO05D000512 1.1e-06 56.6 60 51.7
ATR0665G057 Amborella trichopoda HOM05D000686 ORTHO05D000512 4.2e-06 54.7 63 44.4


User provided reference genes

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