Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.2e-53 212.2 122 100.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.7e-45 184.9 122 85.2
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 9.2e-36 153.7 120 68.3
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-35 153.3 121 70.2
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 7.8e-35 150.6 123 72.4
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-34 149.8 125 66.4
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.1e-33 146.7 123 71.5
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 7.3e-33 144.1 123 71.5
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.5e-25 119.8 115 55.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-25 119.8 115 55.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.3e-25 118.6 115 55.7
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 9.9e-22 107.1 115 52.2
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.2e-21 105.9 106 54.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 4.9e-21 104.8 111 51.4
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 8.4e-21 104.0 109 51.4
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.9e-20 102.8 104 54.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.6e-19 99.8 108 49.1
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 4.6e-19 98.2 115 53.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.5e-17 92.4 105 51.4
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.3e-17 92.0 115 47.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.3e-17 91.7 105 50.5
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.6e-17 91.3 116 46.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 5.6e-17 91.3 109 45.9
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.3e-17 90.9 122 45.1
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.3e-16 90.1 111 47.7
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.6e-16 89.7 105 43.8
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.1e-16 89.4 99 51.5
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.8e-16 89.0 109 45.9
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.8e-16 89.0 99 49.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 3.6e-16 88.6 101 51.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.8e-16 88.2 115 45.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.8e-16 88.2 102 45.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.1e-16 87.4 109 45.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.1e-16 87.4 99 49.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 8.1e-16 87.4 113 44.2
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 8.1e-16 87.4 104 44.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.4e-15 86.7 106 46.2
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.8e-15 86.3 106 43.4
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.4e-15 85.9 102 45.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.1e-15 85.5 116 43.1
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.0e-15 85.1 95 47.4
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.0e-15 85.1 98 45.9
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.3e-15 84.7 117 44.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.3e-15 84.7 106 45.3
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 5.3e-15 84.7 109 45.9
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.9e-15 84.3 114 44.7
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.9e-15 84.3 105 49.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 9.0e-15 84.0 103 45.6
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.2e-14 83.6 114 50.9
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.2e-14 83.6 117 43.6
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-14 83.6 118 44.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.5e-14 83.2 102 49.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.5e-14 83.2 104 46.2
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.5e-14 83.2 115 48.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.5e-14 83.2 106 45.3
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.0e-14 82.8 102 46.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-14 82.8 103 48.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.0e-14 82.8 108 47.2
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 2.0e-14 82.8 117 51.3
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.0e-14 82.8 99 51.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-14 82.4 103 47.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.6e-14 82.4 103 48.5
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.4e-14 82.0 101 47.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 3.4e-14 82.0 100 48.0
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.4e-14 82.0 93 50.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.6e-14 80.9 108 46.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.9e-14 80.5 116 44.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.9e-14 80.5 114 43.0
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 9.9e-14 80.5 106 47.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.3e-13 80.1 104 47.1
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.3e-13 80.1 108 40.7
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.7e-13 79.7 98 44.9
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.7e-13 79.7 100 47.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-13 79.7 106 40.6
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-13 79.0 111 45.0
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 4.9e-13 78.2 120 42.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 4.9e-13 78.2 120 42.5
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.9e-13 78.2 98 56.1
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.4e-13 77.8 91 48.4
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.4e-13 77.8 103 43.7
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.4e-13 77.4 113 39.8
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.4e-13 77.4 113 39.8
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.1e-12 77.0 98 41.8
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.4e-12 76.6 105 44.8
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.4e-12 76.6 103 47.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.2e-12 75.1 101 46.5
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.3e-12 73.9 102 47.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 9.3e-12 73.9 110 43.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 9.3e-12 73.9 99 46.5
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.3e-12 73.9 99 47.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.2e-11 73.6 109 44.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-11 73.6 108 39.8
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-11 72.8 110 43.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.5e-11 72.0 105 43.8
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.5e-11 72.0 112 40.2
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-11 72.0 110 41.8
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.5e-11 72.0 112 44.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.5e-11 72.0 101 43.6
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.5e-11 72.0 106 43.4
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 4.6e-11 71.6 103 43.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.6e-11 71.6 110 42.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.6e-11 71.6 102 42.2
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.0e-11 71.2 96 54.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-11 70.9 99 39.4
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.9e-11 70.9 91 57.1
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.3e-10 70.1 115 40.9
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.8e-10 69.7 116 39.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.0e-10 68.9 126 50.0
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 3.0e-10 68.9 118 45.8
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.9e-10 68.6 93 43.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.9e-10 68.6 91 47.3
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.9e-10 68.6 91 47.3
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 5.1e-10 68.2 90 43.3
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 8.7e-10 67.4 104 41.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-09 67.0 105 41.0
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-09 66.6 110 38.2
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.9e-09 66.2 110 38.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.3e-09 65.5 110 38.2
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.3e-09 65.5 100 40.0
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.3e-09 65.5 100 38.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.3e-09 65.1 113 37.2
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.3e-09 65.1 95 37.9
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.3e-09 65.1 112 39.3
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.6e-09 64.7 112 36.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.4e-09 64.3 114 38.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.4e-09 64.3 109 37.6
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.6e-09 63.9 113 38.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 9.6e-09 63.9 110 37.3
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 9.6e-09 63.9 110 37.3
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 9.6e-09 63.9 110 37.3
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.6e-08 63.2 100 41.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.6e-08 63.2 113 40.7
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 2.1e-08 62.8 92 39.1
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-08 62.8 42 73.8
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.7e-08 62.0 108 49.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.2e-08 61.2 105 39.0
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 6.2e-08 61.2 102 39.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.1e-08 60.8 104 37.5
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.1e-08 60.8 100 40.0
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.1e-08 60.8 113 38.9
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.1e-07 60.5 105 38.1
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.1e-07 60.5 100 39.0
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.1e-07 60.5 114 34.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-07 59.3 105 36.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.4e-07 59.3 113 36.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.4e-07 59.3 113 36.3
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.4e-07 59.3 108 38.0
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.0e-07 58.5 94 39.4
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.0e-07 58.5 105 39.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.9e-07 57.8 105 37.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 9.0e-07 57.4 105 37.1
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 9.0e-07 57.4 107 33.6
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-06 57.0 101 36.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-06 57.0 106 39.6
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-06 56.6 105 34.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-06 56.6 86 44.2
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-06 56.2 100 38.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-06 56.2 100 38.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.0e-06 56.2 107 37.4
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.0e-06 56.2 79 41.8
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 2.6e-06 55.8 101 38.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.4e-06 55.5 105 37.1
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 3.4e-06 55.5 103 34.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.4e-06 55.5 105 37.1
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 4.5e-06 55.1 105 34.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 7.6e-06 54.3 105 34.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.0e-05 53.9 105 36.2
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.0e-05 53.9 105 36.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.0e-05 53.9 106 35.8


User provided reference genes

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