Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 2.7e-143 511.9 249 100.0
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 6.3e-132 474.2 246 93.1
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 8.2e-132 473.8 246 93.5
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.1e-123 446.8 248 89.1
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.1e-120 436.8 248 87.9
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 5.5e-120 434.5 232 90.1
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 7.2e-112 407.5 246 80.9
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 4.5e-106 388.3 244 76.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.3e-105 386.0 247 75.7
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 5.0e-105 384.8 242 77.3
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.5e-104 382.5 249 74.3
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 3.3e-104 382.1 249 77.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 3.3e-104 382.1 244 75.0
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.6e-103 379.8 249 76.3
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 1.7e-100 369.8 222 78.8
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 3.7e-100 368.6 225 78.2
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 6.4e-100 367.9 236 76.7
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.4e-99 366.7 242 73.1
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.2e-99 365.5 227 77.1
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 3.2e-99 365.5 226 75.2
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 3.2e-99 365.5 262 69.1
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 3.2e-99 365.5 249 72.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.2e-98 363.6 232 75.4
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.7e-98 362.5 226 74.3
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 2.7e-98 362.5 216 78.7
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 3.5e-98 362.1 234 73.9
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 4.6e-98 361.7 226 75.2
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 4.6e-98 361.7 234 73.9
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.3e-97 359.4 236 75.0
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 1.1e-96 357.1 229 73.4
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 2.5e-96 355.9 229 73.8
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.5e-96 355.9 229 73.8
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 4.3e-96 355.1 234 74.4
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 4.3e-96 355.1 225 76.0
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.8e-95 352.4 241 69.3
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.8e-95 352.4 237 72.6
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 3.6e-95 352.1 234 71.4
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 6.2e-95 351.3 222 73.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 6.2e-95 351.3 239 71.1
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.0e-95 350.9 229 72.9
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 8.0e-95 350.9 222 74.3
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 8.0e-95 350.9 222 74.3
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.1e-94 350.5 232 72.0
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 1.4e-94 350.1 241 69.3
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.8e-94 349.7 219 76.7
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-94 349.4 229 72.9
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.1e-94 349.0 232 69.0
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 5.2e-94 348.2 221 74.2
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 8.9e-94 347.4 252 65.9
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.9e-94 347.4 241 70.1
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.2e-93 347.1 241 70.5
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.2e-93 347.1 215 76.3
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-93 346.7 229 72.1
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.0e-93 346.3 239 68.2
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.6e-93 345.9 229 72.1
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 2.6e-93 345.9 239 68.6
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.4e-93 345.1 241 69.7
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 4.4e-93 345.1 231 73.6
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.3e-92 343.6 227 73.1
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 2.2e-92 342.8 217 72.4
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 2.2e-92 342.8 242 68.2
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.2e-92 342.8 216 74.5
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 3.7e-92 342.0 221 73.8
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 6.4e-92 341.3 230 71.3
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.1e-91 340.5 223 71.7
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.4e-91 340.1 230 68.7
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 1.4e-91 340.1 231 70.1
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.4e-91 339.3 246 69.5
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.4e-91 339.3 230 70.4
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 4.1e-91 338.6 216 74.1
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.4e-91 338.2 224 72.3
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 7.0e-91 337.8 231 70.1
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 9.2e-91 337.4 239 68.2
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.2e-90 337.0 223 72.6
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.2e-90 337.0 225 69.8
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.0e-90 336.3 217 71.4
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.7e-90 335.9 249 66.3
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 3.5e-90 335.5 228 71.1
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 6.0e-90 334.7 274 62.4
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 6.0e-90 334.7 229 69.4
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-89 333.2 211 73.9
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 2.3e-89 332.8 220 70.5
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 3.9e-89 332.0 244 65.6
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 5.0e-89 331.6 230 69.1
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 5.0e-89 331.6 246 65.4
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 5.0e-89 331.6 227 69.6
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 6.6e-89 331.3 244 65.6
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.1e-88 330.5 221 71.9
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.9e-88 329.7 233 67.8
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 7.3e-88 327.8 253 63.6
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.1e-87 326.2 240 67.9
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 2.8e-87 325.9 238 66.4
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 6.2e-87 324.7 223 70.9
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 8.1e-87 324.3 215 70.2
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.1e-87 324.3 241 64.3
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-86 323.6 296 56.8
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.4e-86 323.6 228 67.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 5.2e-86 321.6 215 68.8
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 6.8e-86 321.2 215 69.3
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 6.8e-86 321.2 215 69.3
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 6.8e-86 321.2 265 63.0
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.5e-85 320.1 228 67.5
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 2.0e-85 319.7 215 68.8
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.7e-84 316.6 391 46.5
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.4e-84 314.7 224 68.3
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 4.1e-83 312.0 244 62.7
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.2e-77 293.9 219 66.7
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 9.9e-77 290.8 234 62.4
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.9e-76 289.3 236 64.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.1e-74 283.1 200 70.5
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.0e-74 281.6 196 69.9
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.5e-72 276.9 208 61.5
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.4e-70 269.6 197 67.0
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 2.2e-68 263.1 257 57.6
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.9e-67 260.0 222 59.5
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 5.4e-67 258.5 186 66.7
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.1e-66 256.5 132 84.8
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-65 253.8 224 58.5
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 9.6e-64 247.7 228 58.3
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.8e-63 246.1 228 57.9
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.4e-61 239.2 201 61.2
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 3.8e-60 235.7 179 66.5
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 5.4e-59 231.9 162 63.6
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.7e-58 229.6 233 52.8
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.9e-56 223.4 120 77.5
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-54 217.2 168 61.9
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 9.0e-54 214.5 153 71.9
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 9.0e-54 214.5 129 74.4
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 9.3e-51 204.5 133 69.9
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.2e-42 177.6 126 57.9
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.7e-41 171.4 151 58.3
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 9.7e-40 167.9 139 61.2
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 2.9e-36 156.4 199 40.7
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.1e-32 144.4 99 64.6
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.5e-29 134.0 92 66.3
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-23 114.4 132 50.8
CAN.G793.55 Capsicum annuum HOM05D005134 ORTHO05D115063 1.4e-14 84.3 65 78.5
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.8e-14 84.0 96 52.1
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-11 74.3 73 61.6
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.0e-08 63.9 32 81.2
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.4e-06 57.8 68 57.4


User provided reference genes

Program Settings