Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.1e-96 356.7 179 100.0
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 8.6e-91 337.0 179 92.7
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 1.5e-90 336.3 179 92.7
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 4.3e-90 334.7 179 92.7
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 3.4e-79 298.5 189 84.7
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 5.1e-75 284.6 189 81.5
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 4.8e-73 278.1 178 78.7
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.0e-63 246.1 189 67.2
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 6.5e-62 241.1 187 67.9
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 1.4e-61 240.0 187 65.8
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.6e-60 236.5 183 66.7
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 7.9e-60 234.2 193 67.4
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 1.5e-58 229.9 159 74.2
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 2.1e-57 226.1 188 66.0
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 3.7e-57 225.3 192 62.0
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.1e-56 223.8 174 69.0
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 3.1e-56 222.2 199 62.8
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 6.9e-56 221.1 187 65.8
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 2.0e-55 219.5 156 71.2
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 2.0e-55 219.5 157 75.8
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 2.0e-55 219.5 151 74.8
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.6e-55 219.2 140 77.9
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 3.4e-55 218.8 146 76.7
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.0e-54 217.2 185 62.7
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.3e-54 216.9 134 80.6
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 1.3e-54 216.9 134 80.6
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.7e-54 216.5 186 64.0
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 2.2e-54 216.1 187 64.7
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 2.9e-54 215.7 189 64.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.9e-54 215.7 152 73.0
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 3.8e-54 215.3 125 85.6
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 3.8e-54 215.3 141 79.4
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 5.0e-54 214.9 192 59.4
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 5.0e-54 214.9 139 79.1
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 5.0e-54 214.9 152 71.7
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 6.5e-54 214.5 168 68.5
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 6.5e-54 214.5 190 62.6
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 8.4e-54 214.2 138 78.3
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.1e-53 213.8 185 63.8
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.1e-53 213.8 132 79.5
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 1.4e-53 213.4 169 67.5
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.2e-53 212.2 168 67.3
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 4.2e-53 211.8 185 62.2
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 4.2e-53 211.8 162 69.8
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 4.2e-53 211.8 146 71.9
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 5.5e-53 211.5 177 65.5
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 9.3e-53 210.7 145 74.5
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.2e-52 210.3 168 66.1
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 1.2e-52 210.3 191 59.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.6e-52 209.9 188 60.6
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 1.6e-52 209.9 188 61.2
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.0e-51 207.2 133 81.2
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 1.3e-51 206.8 144 71.5
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 1.3e-51 206.8 179 62.0
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 1.3e-51 206.8 127 80.3
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.8e-51 206.5 188 60.6
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 2.3e-51 206.1 140 75.7
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.9e-51 205.3 137 75.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 6.7e-51 204.5 168 65.5
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.1e-50 203.8 162 69.8
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.5e-50 203.4 173 64.2
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 2.5e-50 202.6 135 73.3
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 4.3e-50 201.8 176 65.9
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 5.7e-50 201.4 167 65.3
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 5.7e-50 201.4 156 67.9
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 1.3e-49 200.3 172 65.1
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.8e-49 199.1 155 69.7
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 4.8e-49 198.4 209 53.1
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 4.8e-49 198.4 187 58.8
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 8.2e-49 197.6 139 71.9
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.4e-48 196.8 130 76.9
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.8e-48 196.4 162 63.0
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.4e-48 196.1 155 69.0
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 5.3e-48 194.9 173 63.6
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.9e-48 194.5 155 68.4
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 9.0e-48 194.1 141 70.2
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 9.0e-48 194.1 155 68.4
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 9.0e-48 194.1 176 60.2
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 1.2e-47 193.7 128 79.7
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 1.5e-47 193.4 165 64.8
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 2.0e-47 193.0 163 65.0
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.0e-47 193.0 134 76.9
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 2.6e-47 192.6 140 69.3
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.6e-47 192.6 134 76.9
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 3.4e-47 192.2 168 63.1
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 4.5e-47 191.8 139 72.7
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.5e-47 191.8 155 67.7
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 4.5e-47 191.8 149 65.8
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 5.9e-47 191.4 165 63.6
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 7.7e-47 191.0 168 63.1
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.3e-46 190.3 154 64.9
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.3e-46 190.3 154 64.9
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.7e-46 189.9 131 74.0
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 3.8e-46 188.7 168 62.5
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 6.5e-46 188.0 123 74.8
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 7.2e-45 184.5 179 59.2
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 3.6e-44 182.2 119 76.5
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 6.7e-43 177.9 122 77.0
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 4.3e-42 175.3 179 57.5
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.3e-41 173.7 125 71.2
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.3e-41 173.7 185 56.2
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.2e-41 172.9 186 55.4
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 3.8e-38 162.2 164 57.3
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.9e-37 159.8 109 72.5
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.1e-35 151.8 202 48.0
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 9.7e-34 147.5 116 69.8
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.8e-32 143.3 86 83.7
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.5e-29 133.7 107 66.4
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 9.4e-29 131.0 100 71.0
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 4.7e-28 128.6 107 64.5
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.0e-27 127.5 93 68.8
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.4e-27 127.1 79 79.7
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 3.0e-27 125.9 93 68.8
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 5.2e-27 125.2 87 72.4
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.3e-25 120.6 87 69.0
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 4.8e-25 118.6 112 59.8
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 1.1e-24 117.5 85 71.8
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.6e-23 113.6 111 55.9
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 5.9e-23 111.7 180 43.3
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 3.2e-21 105.9 67 76.1
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 7.2e-21 104.8 76 65.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.3e-19 99.8 104 52.9
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.5e-18 97.1 64 75.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.8e-17 92.0 95 54.7
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 6.3e-17 91.7 71 66.2
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 4.1e-16 89.0 96 54.2
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.1e-16 89.0 116 42.2
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.5e-13 80.5 92 46.7
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 1.2e-10 70.9 59 62.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.0e-07 60.1 87 42.5
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 5.9e-07 58.5 85 43.5


User provided reference genes

Program Settings