Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 6.0e-71 270.8 142 100.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 3.8e-49 198.4 119 89.9
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.9e-48 196.1 119 89.9
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 3.2e-48 195.3 119 88.2
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 9.7e-45 183.7 121 83.5
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.4e-43 179.9 119 82.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.6e-42 175.6 119 80.7
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.7e-41 172.9 120 78.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.7e-41 172.9 120 78.3
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.7e-41 172.9 119 79.8
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-40 169.9 147 68.0
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.2e-40 168.3 119 76.5
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 5.5e-40 167.9 119 73.9
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 5.5e-40 167.9 117 78.6
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.0e-38 163.7 146 66.4
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.5e-37 159.8 122 73.8
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-36 156.8 120 73.3
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.8e-36 155.6 120 71.7
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.8e-36 155.6 120 71.7
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.8e-36 154.8 120 73.3
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 6.3e-36 154.5 120 70.8
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.1e-35 153.7 119 70.6
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.4e-35 153.3 119 73.1
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.4e-35 153.3 119 70.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.2e-34 150.2 120 68.3
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.6e-34 149.8 119 69.7
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.6e-34 149.1 120 70.0
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 3.5e-34 148.7 119 68.1
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 4.5e-34 148.3 119 68.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 4.5e-34 148.3 119 68.9
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-33 146.7 132 64.4
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 2.2e-33 146.0 118 67.8
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.9e-33 145.6 103 75.7
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.9e-32 142.9 132 63.6
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-32 142.9 120 65.8
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.9e-32 142.9 120 65.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 4.2e-32 141.7 121 68.6
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.5e-32 141.4 113 67.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.5e-32 141.4 122 68.9
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 7.2e-32 141.0 117 66.7
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.2e-31 140.2 125 61.6
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.2e-31 140.2 123 68.3
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.6e-31 139.8 120 66.7
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.6e-31 139.8 113 66.4
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.6e-31 139.8 120 68.3
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.6e-31 139.8 115 68.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.1e-31 139.4 120 69.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.1e-31 139.4 120 65.8
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.1e-31 139.4 121 66.1
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.6e-31 138.7 120 67.5
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.6e-31 138.7 119 68.1
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 6.1e-31 137.9 119 65.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 6.1e-31 137.9 119 64.7
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-30 136.7 120 66.7
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.8e-30 136.3 113 64.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.8e-30 136.3 113 64.6
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.3e-30 136.0 119 65.5
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.0e-30 135.6 121 62.8
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 4.0e-30 135.2 119 63.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.2e-30 134.8 120 64.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 5.2e-30 134.8 113 63.7
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.2e-29 133.7 129 58.9
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.2e-29 133.7 119 63.0
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.2e-29 133.7 120 62.5
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.5e-29 133.3 119 62.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.5e-29 133.3 119 62.2
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.0e-29 132.9 129 58.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.5e-29 131.0 125 60.8
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 9.7e-29 130.6 110 67.3
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 2.2e-28 129.4 122 64.8
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 2.2e-28 129.4 122 64.8
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.2e-28 129.4 112 65.2
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.2e-28 129.4 130 57.7
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.3e-28 127.9 115 64.3
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 6.3e-28 127.9 116 61.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.1e-27 127.1 119 60.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.1e-27 125.6 131 57.3
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 4.1e-27 125.2 119 61.3
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.0e-27 124.4 119 58.8
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 9.1e-27 124.0 121 64.5
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.2e-26 123.6 114 64.9
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.6e-26 123.2 120 61.7
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 4.5e-26 121.7 119 56.3
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.9e-26 121.3 131 56.5
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.0e-25 120.6 131 55.0
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.7e-25 119.8 131 55.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 2.9e-25 119.0 120 55.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.9e-25 119.0 121 57.9
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 8.5e-25 117.5 126 54.8
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 8.5e-25 117.5 120 58.3
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.1e-24 117.1 97 63.9
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.9e-24 116.3 121 56.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.5e-24 115.9 120 55.0
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 3.2e-24 115.5 118 62.7
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.2e-24 115.2 125 57.6
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 9.4e-24 114.0 122 57.4
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.1e-23 112.8 126 53.2
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.7e-23 112.5 122 55.7
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.6e-23 112.1 120 56.7
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 8.0e-23 110.9 97 62.9
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.4e-22 110.2 108 56.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.4e-22 110.2 117 55.6
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-22 109.8 117 56.4
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.3e-22 109.4 123 53.7
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 4.0e-22 108.6 121 52.9
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 8.8e-22 107.5 136 52.9
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.2e-21 107.1 121 53.7
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.5e-21 106.7 126 53.2
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.4e-21 105.1 116 56.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.7e-21 104.8 125 56.8
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 9.8e-21 104.0 126 49.2
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.3e-20 103.6 124 56.5
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 1.1e-19 100.5 112 50.9
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.4e-19 100.1 102 57.8
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.8e-19 99.8 112 53.6
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.9e-17 92.4 112 50.0
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.9e-17 92.4 112 50.0
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.9e-17 92.4 112 50.0
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.1e-16 90.5 144 45.8
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.5e-16 90.1 104 51.9
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 9.5e-16 87.4 68 64.7
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.6e-15 85.5 129 44.2
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.6e-15 85.5 121 42.1
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 4.7e-15 85.1 117 47.0
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.4e-14 83.6 123 45.5
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.8e-14 83.2 125 40.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-14 83.2 120 43.3
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.3e-14 82.8 105 48.6
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.0e-14 82.4 120 43.3
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 4.0e-14 82.0 120 41.7
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.2e-14 81.6 118 48.3
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 8.9e-14 80.9 123 42.3
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.6e-13 79.3 119 49.6
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 4.4e-13 78.6 124 44.4
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 4.4e-13 78.6 124 39.5
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 5.7e-13 78.2 73 65.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.7e-12 76.6 129 42.6
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.0e-10 69.7 66 54.5
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.3e-09 67.0 62 56.5
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.6e-08 61.6 42 69.0
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 1.6e-07 60.1 93 48.4
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.2e-06 55.1 112 41.1


User provided reference genes

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