Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G790.65 Capsicum annuum HOM05D001693 ORTHO05D001588 1.4e-79 299.7 161 100.0
Nitab4.5_0007160g0020 Nicotiana tabacum HOM05D001693 ORTHO05D001588 4.8e-56 221.5 158 79.1
Nitab4.5_0001485g0020 Nicotiana tabacum HOM05D001693 ORTHO05D001588 8.1e-56 220.7 158 79.1
PGSC0003DMG400024535 Solanum tuberosum HOM05D001693 ORTHO05D001588 1.5e-54 216.5 158 77.8
Solyc03g115000.3 Solanum lycopersicum HOM05D001693 ORTHO05D001588 9.9e-54 213.8 158 76.6
Sopen03g034070 Solanum pennellii HOM05D001693 ORTHO05D001588 3.2e-52 208.8 158 74.7
Peaxi162Scf00201g00333 Petunia axillaris HOM05D001693 ORTHO05D001588 3.3e-49 198.7 158 74.7
Dinv17428 Davidia involucrata HOM05D001693 ORTHO05D001588 3.4e-30 135.6 145 57.9
Dinv22770 Davidia involucrata HOM05D001693 ORTHO05D001588 4.6e-27 125.2 134 58.2
CiPaw.11G055000 Carya illinoinensis HOM05D001693 ORTHO05D001588 5.7e-25 118.2 161 47.2
QL10p019883 Quercus lobata HOM05D001693 ORTHO05D001588 1.3e-24 117.1 162 50.0
Cfa019350 Carpinus fangiana HOM05D001693 ORTHO05D001588 1.7e-24 116.7 162 50.6
Haze_07741 Corylus avellana HOM05D001693 ORTHO05D001588 1.7e-24 116.7 162 50.0
Potri.015G058900 Populus trichocarpa HOM05D001693 ORTHO05D001588 2.8e-24 115.9 160 48.1
Sabra15G0084400 Salix brachista HOM05D001693 ORTHO05D001588 2.8e-24 115.9 159 48.4
TWI81G0794 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 2.4e-23 112.8 148 51.4
Manes.06G083300 Manihot esculenta HOM05D001693 ORTHO05D001588 6.9e-23 111.3 157 50.3
Actinidia35042 Actinidia chinensis HOM05D001693 ORTHO05D001588 9.1e-23 110.9 147 54.4
AUR62008553 Chenopodium quinoa HOM05D001693 ORTHO05D001588 1.2e-22 110.5 156 44.9
AUR62039644 Chenopodium quinoa HOM05D001693 ORTHO05D001588 1.2e-22 110.5 156 44.9
CSS0011639 Camellia sinensis var. sinensis HOM05D001693 ORTHO05D001588 1.5e-22 110.2 143 49.0
CSS0025996 Camellia sinensis var. sinensis HOM05D001693 ORTHO05D001588 1.5e-22 110.2 143 49.0
Ciclev10018601m.g Citrus clementina HOM05D001693 ORTHO05D001588 2.0e-22 109.8 153 49.7
Manes.14G086600 Manihot esculenta HOM05D001693 ORTHO05D001588 2.6e-22 109.4 157 49.0
AUR62021539 Chenopodium quinoa HOM05D001693 ORTHO05D001588 3.4e-22 109.0 151 46.4
TWI60G1393 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 1.0e-21 107.5 156 47.4
Glyma.06G204400 Glycine max HOM05D001693 ORTHO05D001588 1.7e-21 106.7 162 46.3
Rhsim12G0149000 Rhododendron simsii HOM05D001693 ORTHO05D001588 1.7e-21 106.7 158 50.0
Gohir.A09G243600 Gossypium hirsutum HOM05D001693 ORTHO05D001588 2.9e-21 105.9 148 45.3
MD14G1213600 Malus domestica HOM05D001693 ORTHO05D001588 3.8e-21 105.5 157 49.0
TAR629G1877 Trochodendron aralioides HOM05D001693 ORTHO05D001588 5.0e-21 105.1 162 44.4
Prupe.5G206500 Prunus persica HOM05D001693 ORTHO05D001588 8.5e-21 104.4 156 46.8
Cc00_g03480 Coffea canephora HOM05D001693 ORTHO05D001588 1.4e-20 103.6 162 44.4
COL.COLO4_24325 Corchorus olitorius HOM05D001693 ORTHO05D001588 1.9e-20 103.2 155 43.9
SalBow7G1019 Salvia bowleyana HOM05D001693 ORTHO05D001588 5.5e-20 101.7 157 44.6
Potri.012G061900 Populus trichocarpa HOM05D001693 ORTHO05D001588 7.2e-20 101.3 158 45.6
Glyma.04G161000 Glycine max HOM05D001693 ORTHO05D001588 9.4e-20 100.9 161 44.7
Sed0007310 Sechium edule HOM05D001693 ORTHO05D001588 9.4e-20 100.9 158 45.6
CsaV3_1G006080 Cucumis sativus L. HOM05D001693 ORTHO05D001588 1.2e-19 100.5 152 45.4
Gohir.D09G244300 Gossypium hirsutum HOM05D001693 ORTHO05D001588 1.2e-19 100.5 148 45.3
Gorai.006G268300 Gossypium raimondii HOM05D001693 ORTHO05D001588 1.2e-19 100.5 148 45.3
ClCG04G011700 Citrullus lanatus HOM05D001693 ORTHO05D001588 1.6e-19 100.1 152 45.4
Duzib084G0885 Durio zibethinus HOM05D001693 ORTHO05D001588 1.6e-19 100.1 147 44.9
Duzib205G1195 Durio zibethinus HOM05D001693 ORTHO05D001588 2.1e-19 99.8 141 45.4
MELO3C002039.2 Cucumis melo HOM05D001693 ORTHO05D001588 2.7e-19 99.4 152 45.4
Gorai.001G076600 Gossypium raimondii HOM05D001693 ORTHO05D001588 3.6e-19 99.0 152 42.8
Glyma.17G080000 Glycine max HOM05D001693 ORTHO05D001588 4.7e-19 98.6 157 45.2
Oeu032098.1 Olea europaea HOM05D001693 ORTHO05D001588 4.7e-19 98.6 153 46.4
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 6.1e-19 98.2 161 46.0
Actinidia18984 Actinidia chinensis HOM05D001693 ORTHO05D001588 6.1e-19 98.2 145 47.6
Eucgr.B00609 Eucalyptus grandis HOM05D001693 ORTHO05D001588 7.9e-19 97.8 153 45.1
Gohir.D07G072400 Gossypium hirsutum HOM05D001693 ORTHO05D001588 7.9e-19 97.8 152 42.1
GSVIVG01032914001 Vitis vinifera HOM05D001693 ORTHO05D001588 7.9e-19 97.8 155 45.2
DCAR_010159 Daucus carota HOM05D001693 ORTHO05D001588 1.4e-18 97.1 159 45.9
Gohir.A07G067800 Gossypium hirsutum HOM05D001693 ORTHO05D001588 1.4e-18 97.1 155 41.9
Sabra12G0044900 Salix brachista HOM05D001693 ORTHO05D001588 1.4e-18 97.1 158 43.7
FAN08G3550 Fragaria x ananassa HOM05D001693 ORTHO05D001588 1.8e-18 96.7 141 51.1
Thecc.03G104000 Theobroma cacao HOM05D001693 ORTHO05D001588 1.8e-18 96.7 141 44.7
Migut.D01631 Erythranthe guttata HOM05D001693 ORTHO05D001588 3.0e-18 95.9 159 45.3
Oeu044881.3 Olea europaea HOM05D001693 ORTHO05D001588 3.0e-18 95.9 160 50.0
Hund02574 Selenicereus undatus HOM05D001693 ORTHO05D001588 3.0e-18 95.9 156 42.3
RcHm_v2.0_Chr7g0183251 Rosa chinensis HOM05D001693 ORTHO05D001588 3.9e-18 95.5 146 49.3
EL10Ac5g11155 Beta vulgaris HOM05D001693 ORTHO05D001588 6.7e-18 94.7 155 40.6
TAR622G1027 Trochodendron aralioides HOM05D001693 ORTHO05D001588 6.7e-18 94.7 159 45.3
Atru.chr9.541 Acer truncatum HOM05D001693 ORTHO05D001588 1.1e-17 94.0 138 47.1
Medtr3g026110 Medicago truncatula HOM05D001693 ORTHO05D001588 2.0e-17 93.2 160 44.4
Phvul.009G202300 Phaseolus vulgaris HOM05D001693 ORTHO05D001588 2.0e-17 93.2 161 42.9
MSTRG.4485 Avicennia marina HOM05D001693 ORTHO05D001588 3.3e-17 92.4 158 44.3
VMungo1309G2921 Vigna mungo HOM05D001693 ORTHO05D001588 3.3e-17 92.4 162 43.8
Glyma.05G019800 Glycine max HOM05D001693 ORTHO05D001588 4.4e-17 92.0 157 42.7
Lj1g0002041 Lotus japonicus HOM05D001693 ORTHO05D001588 4.4e-17 92.0 150 44.7
Oeu017182.1 Olea europaea HOM05D001693 ORTHO05D001588 4.4e-17 92.0 154 46.8
Sed0016442 Sechium edule HOM05D001693 ORTHO05D001588 4.4e-17 92.0 152 43.4
Psat5g202520 Pisum sativum HOM05D001693 ORTHO05D001588 5.7e-17 91.7 159 42.1
FvH4_5g13690 Fragaria vesca HOM05D001693 ORTHO05D001588 9.7e-17 90.9 149 48.3
FAN18G4227 Fragaria x ananassa HOM05D001693 ORTHO05D001588 9.7e-17 90.9 149 48.3
Lalb_Chr12g0197281 Lupinus albus HOM05D001693 ORTHO05D001588 1.3e-16 90.5 155 46.5
arahy.Tifrunner.gnm1.ann1.HRE7NK Arachis hypogaea HOM05D001693 ORTHO05D001588 1.7e-16 90.1 149 44.3
arahy.Tifrunner.gnm1.ann1.ZRKH1E Arachis hypogaea HOM05D001693 ORTHO05D001588 1.7e-16 90.1 149 44.3
Sc04g0004410 Simmondsia chinensis HOM05D001693 ORTHO05D001588 3.7e-16 89.0 148 41.9
TAR371G0403 Trochodendron aralioides HOM05D001693 ORTHO05D001588 6.3e-16 88.2 162 40.1
Ca_26687_v3 Cicer arietinum L. HOM05D001693 ORTHO05D001588 8.2e-16 87.8 161 42.2
Cpa.g.sc94.63 Carica papaya HOM05D001693 ORTHO05D001588 1.1e-15 87.4 143 45.5
FAN13G0593 Fragaria x ananassa HOM05D001693 ORTHO05D001588 1.1e-15 87.4 149 47.7
TAR374G0252 Trochodendron aralioides HOM05D001693 ORTHO05D001588 3.1e-15 85.9 137 46.7
DCAR_014029 Daucus carota HOM05D001693 ORTHO05D001588 4.1e-15 85.5 151 43.7
vmacro16490 Vaccinium macrocarpon HOM05D001693 ORTHO05D001588 4.1e-15 85.5 158 42.4
Thhalv10018061m.g Eutrema salsugineum HOM05D001693 ORTHO05D001588 6.9e-15 84.7 147 46.3
Aqoxy3G03674 Aquilegia oxysepala HOM05D001693 ORTHO05D001588 9.1e-15 84.3 151 43.7
Nn4g23454 Nelumbo nucifera HOM05D001693 ORTHO05D001588 9.1e-15 84.3 162 40.7
arahy.Tifrunner.gnm1.ann1.AX54M2 Arachis hypogaea HOM05D001693 ORTHO05D001588 1.2e-14 84.0 158 38.6
arahy.Tifrunner.gnm1.ann1.6FF65R Arachis hypogaea HOM05D001693 ORTHO05D001588 1.5e-14 83.6 161 37.3
Lj5A133T99 Lonicera japonica HOM05D001693 ORTHO05D001588 2.0e-14 83.2 153 41.2
vmacro17617 Vaccinium macrocarpon HOM05D001693 ORTHO05D001588 2.0e-14 83.2 152 44.1
Phvul.003G183600 Phaseolus vulgaris HOM05D001693 ORTHO05D001588 2.6e-14 82.8 142 44.4
Dinv34934 Davidia involucrata HOM05D001693 ORTHO05D001588 4.5e-14 82.0 163 39.3
BcaC03g15486 Brassica carinata HOM05D001693 ORTHO05D001588 7.7e-14 81.3 174 40.2
Hund09931 Selenicereus undatus HOM05D001693 ORTHO05D001588 7.7e-14 81.3 163 38.7
Lalb_Chr07g0178331 Lupinus albus HOM05D001693 ORTHO05D001588 1.0e-13 80.9 157 38.9
Duzib068G0697 Durio zibethinus HOM05D001693 ORTHO05D001588 1.7e-13 80.1 156 39.1
THA.LOC104812109 Tarenaya hassleriana HOM05D001693 ORTHO05D001588 2.2e-13 79.7 141 41.8
Aa31LG7G3380 Aethionema arabicum HOM05D001693 ORTHO05D001588 2.9e-13 79.3 163 41.7
C02p31650 Brassica napus HOM05D001693 ORTHO05D001588 2.9e-13 79.3 154 42.9
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 2.9e-13 79.3 173 37.0
SGA_v2.0_scaffold28G11742 Striga asiatica HOM05D001693 ORTHO05D001588 3.8e-13 79.0 144 43.1
BolC2t09197H Brassica oleracea HOM05D001693 ORTHO05D001588 5.0e-13 78.6 152 41.4
Sp5g29370 Schrenkiella parvula HOM05D001693 ORTHO05D001588 8.5e-13 77.8 165 42.4
AL2G34060 Arabidopsis lyrata HOM05D001693 ORTHO05D001588 3.2e-12 75.9 163 40.5
Carub.0001s1825 Capsella rubella HOM05D001693 ORTHO05D001588 4.2e-12 75.5 135 45.2
Carub.0002s2097 Capsella rubella HOM05D001693 ORTHO05D001588 4.2e-12 75.5 155 41.3
PGR083G1685 Punica granatum HOM05D001693 ORTHO05D001588 4.2e-12 75.5 148 42.6
MSTRG.9596 Avicennia marina HOM05D001693 ORTHO05D001588 7.2e-12 74.7 163 39.9
A02p19130 Brassica napus HOM05D001693 ORTHO05D001588 7.2e-12 74.7 152 40.1
BraA02t06961Z Brassica rapa HOM05D001693 ORTHO05D001588 7.2e-12 74.7 152 40.1
AT1G74160 Arabidopsis thaliana HOM05D001693 ORTHO05D001588 4.7e-11 72.0 148 41.9
Aa31LG4G4480 Aethionema arabicum HOM05D001693 ORTHO05D001588 6.1e-11 71.6 136 44.1
VMungo1215G1702 Vigna mungo HOM05D001693 ORTHO05D001588 1.0e-10 70.9 148 41.2
CARHR067310 Cardamine hirsuta HOM05D001693 ORTHO05D001588 3.9e-10 68.9 156 38.5
AL1G31060 Arabidopsis lyrata HOM05D001693 ORTHO05D001588 5.2e-10 68.6 138 39.9
PSO017G6934 Papaver somniferum HOM05D001693 ORTHO05D001588 5.2e-10 68.6 152 36.2
PSO478G0756 Papaver somniferum HOM05D001693 ORTHO05D001588 8.8e-10 67.8 138 37.7
Sp1g16590 Schrenkiella parvula HOM05D001693 ORTHO05D001588 8.8e-10 67.8 160 40.6
TWI60G1021 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 4.4e-09 65.5 162 35.8
AT1G18620 Arabidopsis thaliana HOM05D001693 ORTHO05D001588 9.7e-09 64.3 138 39.1
CANSAT80G0093 Cannabis sativa HOM05D001693 ORTHO05D001588 1.3e-08 63.9 156 39.1
ClCG06G015570 Citrullus lanatus HOM05D001693 ORTHO05D001588 1.3e-08 63.9 150 38.0
CDE04G1083 Ceratophyllum demersum HOM05D001693 ORTHO05D001588 2.2e-08 63.2 153 35.3
Actinidia36250 Actinidia chinensis HOM05D001693 ORTHO05D001588 2.8e-08 62.8 164 34.1
C08p18790 Brassica napus HOM05D001693 ORTHO05D001588 2.8e-08 62.8 135 41.5
BolC8t49505H Brassica oleracea HOM05D001693 ORTHO05D001588 2.8e-08 62.8 135 41.5
CsaV3_1G003000 Cucumis sativus L. HOM05D001693 ORTHO05D001588 8.2e-08 61.2 150 37.3
BcaB03g14493 Brassica carinata HOM05D001693 ORTHO05D001588 1.1e-07 60.8 159 39.6
BraA08t34963Z Brassica rapa HOM05D001693 ORTHO05D001588 1.4e-07 60.5 158 37.3
CDE07G0414 Ceratophyllum demersum HOM05D001693 ORTHO05D001588 1.4e-07 60.5 151 35.8
ECA246G0150 Erigeron canadensis HOM05D001693 ORTHO05D001588 1.8e-07 60.1 148 34.5
Actinidia17589 Actinidia chinensis HOM05D001693 ORTHO05D001588 2.4e-07 59.7 163 36.8
TPR.G12178 Trifolium pratense HOM05D001693 ORTHO05D001588 2.4e-07 59.7 130 37.7
HanXRQChr08g0230431 Helianthus annuus HOM05D001693 ORTHO05D001588 3.1e-07 59.3 145 36.6
MD09G1068400 Malus domestica HOM05D001693 ORTHO05D001588 4.1e-07 58.9 155 32.9
MELO3C017231.2 Cucumis melo HOM05D001693 ORTHO05D001588 7.0e-07 58.2 150 37.3
VMungo0720G2469 Vigna mungo HOM05D001693 ORTHO05D001588 9.1e-07 57.8 142 38.7
ATR0177G034 Amborella trichopoda HOM05D001693 ORTHO05D001588 1.2e-06 57.4 177 35.6
Actinidia26255 Actinidia chinensis HOM05D001693 ORTHO05D001588 2.0e-06 56.6 164 36.6
QL02p067404 Quercus lobata HOM05D001693 ORTHO05D001588 2.6e-06 56.2 145 34.5
MD17G1061300 Malus domestica HOM05D001693 ORTHO05D001588 5.9e-06 55.1 155 32.9
Os07g0109400 Oryza sativa ssp. japonica HOM05D001693 ORTHO05D001588 7.7e-06 54.7 169 31.4
Prupe.3G252400 Prunus persica HOM05D001693 ORTHO05D001588 7.7e-06 54.7 160 35.0


User provided reference genes

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