Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 7.4e-189 663.7 328 100.0
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 2.4e-139 499.2 312 79.8
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 6.6e-137 491.1 334 76.6
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.1e-136 490.3 334 76.6
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 2.4e-131 472.6 262 87.4
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.0e-129 467.2 262 86.3
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 9.5e-128 460.7 330 74.2
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 1.1e-110 404.1 334 63.8
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 6.0e-106 388.3 326 62.0
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 2.3e-105 386.3 324 63.0
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 4.3e-104 382.1 327 59.9
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 6.2e-103 378.3 322 60.9
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.5e-101 373.6 298 62.1
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 9.9e-101 370.9 322 59.9
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 9.9e-101 370.9 325 60.3
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.3e-100 370.5 257 68.1
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.7e-100 370.2 290 63.4
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 3.8e-100 369.0 256 67.6
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 6.4e-100 368.2 330 58.2
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.9e-99 366.7 288 63.2
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 4.2e-99 365.5 321 58.9
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 5.4e-99 365.2 296 60.1
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 5.4e-99 365.2 294 62.6
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.2e-98 364.0 325 57.2
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.2e-98 364.0 284 62.7
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 2.7e-98 362.8 322 59.0
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 1.3e-97 360.5 280 61.8
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 2.3e-97 359.8 319 60.2
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 3.9e-97 359.0 291 60.1
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 6.6e-97 358.2 324 59.0
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 9.6e-96 354.4 325 57.5
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 2.8e-95 352.8 320 56.6
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 3.6e-95 352.4 322 58.4
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 8.1e-95 351.3 326 58.0
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.1e-94 350.9 334 56.6
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 1.1e-94 350.9 274 62.8
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.1e-94 350.9 308 56.8
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 1.4e-94 350.5 262 64.1
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.8e-94 350.1 292 59.2
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 2.4e-94 349.7 317 57.7
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.4e-94 349.7 323 56.0
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 2.4e-94 349.7 296 59.1
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 5.3e-94 348.6 299 58.9
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 9.0e-94 347.8 259 64.9
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.5e-93 347.1 338 55.3
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 2.6e-93 346.3 327 56.9
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 3.4e-93 345.9 315 57.1
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 4.5e-93 345.5 317 57.4
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 4.5e-93 345.5 331 57.7
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 1.3e-92 344.0 323 54.8
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 3.8e-92 342.4 268 61.2
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 4.9e-92 342.0 317 56.2
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 8.4e-92 341.3 279 59.9
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 8.4e-92 341.3 319 57.4
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.4e-91 340.5 247 66.0
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 1.9e-91 340.1 328 54.3
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 3.2e-91 339.3 252 65.1
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 3.2e-91 339.3 291 58.4
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 3.2e-91 339.3 317 56.8
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 5.4e-91 338.6 258 64.7
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 9.3e-91 337.8 252 65.1
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 9.3e-91 337.8 254 63.8
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 9.3e-91 337.8 274 60.2
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 9.3e-91 337.8 254 63.8
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 9.3e-91 337.8 274 60.2
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.6e-90 337.0 274 59.9
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 2.1e-90 336.7 254 63.8
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 2.1e-90 336.7 321 54.8
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 2.7e-90 336.3 314 56.1
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 2.7e-90 336.3 274 60.2
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 3.5e-90 335.9 254 64.2
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 4.6e-90 335.5 254 65.4
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 1.0e-89 334.3 319 52.0
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.0e-89 334.3 257 61.5
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 2.3e-89 333.2 315 54.6
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 3.0e-89 332.8 271 60.1
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 1.1e-88 330.9 251 64.1
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 1.5e-88 330.5 326 54.9
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 2.5e-88 329.7 288 58.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.3e-88 328.9 252 63.1
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.3e-88 328.9 252 63.1
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 7.4e-88 328.2 311 55.0
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 1.6e-87 327.0 326 54.6
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 6.2e-87 325.1 319 53.0
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 3.1e-86 322.8 271 59.4
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 1.5e-85 320.5 314 54.5
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 4.5e-85 318.9 318 53.8
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.7e-84 317.0 283 56.9
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.4e-83 313.2 222 66.2
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 9.3e-83 311.2 314 52.5
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 2.3e-81 306.6 250 58.0
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 5.1e-81 305.4 254 61.4
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 7.4e-80 301.6 277 54.2
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 9.6e-80 301.2 399 42.9
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.4e-78 297.4 330 52.4
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.7e-76 290.4 417 41.5
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.4e-75 287.3 239 56.5
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 6.7e-73 278.5 243 57.2
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 7.4e-72 275.0 286 49.7
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 8.5e-68 261.5 225 60.4
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 1.9e-64 250.4 159 71.7
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 9.1e-62 241.5 254 50.4
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 3.6e-58 229.6 235 51.5
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 8.8e-57 224.9 249 47.4
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 2.0e-56 223.8 243 47.3
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 2.0e-56 223.8 275 44.4
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 1.2e-53 214.5 249 43.0
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 3.8e-52 209.5 200 54.0
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.1e-51 208.0 130 73.1
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.7e-44 184.1 195 49.7
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 4.4e-32 142.9 91 70.3
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 4.4e-32 142.9 145 47.6
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 4.5e-29 132.9 106 57.5
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.0e-28 131.7 105 62.9
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.7e-28 131.0 158 51.3
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 3.6e-26 123.2 132 51.5
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 4.7e-26 122.9 159 45.9
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 8.0e-26 122.1 164 46.3
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 1.0e-25 121.7 160 48.1
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 3.0e-25 120.2 74 70.3
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 1.1e-22 111.7 169 36.7
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 3.1e-22 110.2 75 69.3
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 3.1e-22 110.2 256 27.3
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 3.1e-22 110.2 158 39.9
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 2.0e-21 107.5 106 47.2
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.1e-19 101.7 106 44.3
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 1.8e-17 94.4 136 44.9
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 7.5e-16 89.0 284 25.7
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.3e-15 85.5 90 51.1
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-14 85.1 90 50.0
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.4e-14 84.7 90 51.1
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 1.8e-14 84.3 239 29.7
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 2.7e-13 80.5 140 35.0
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 5.9e-13 79.3 193 31.1
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 7.8e-13 79.0 75 52.0
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.0e-12 77.0 75 52.0
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.5e-11 73.9 48 66.7
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 2.5e-11 73.9 292 27.4
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 4.3e-11 73.2 253 27.7
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 7.3e-11 72.4 226 27.4
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 3.6e-10 70.1 310 25.8
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 6.2e-10 69.3 326 26.4
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 8.0e-10 68.9 235 28.9
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 1.0e-09 68.6 240 28.3
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 2.3e-09 67.4 246 29.3
Duzib177G0997 Durio zibethinus HOM05D006013 ORTHO05D007383 3.1e-09 67.0 256 28.5
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 4.4e-08 63.2 240 27.5
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 7.5e-08 62.4 75 50.7
Lalb_Chr01g0011841 Lupinus albus HOM05D003731 ORTHO05D004429 1.7e-07 61.2 227 26.9
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 6.4e-07 59.3 235 28.1
TAR625G0125 Trochodendron aralioides HOM05D003731 ORTHO05D004429 1.4e-06 58.2 226 26.1
CANSAT01G0693 Cannabis sativa HOM05D003731 ORTHO05D004429 1.9e-06 57.8 226 25.7
PSO063G0738 Papaver somniferum HOM05D003731 ORTHO05D004429 2.4e-06 57.4 227 25.6
MSTRG.22505 Avicennia marina HOM05D003731 ORTHO05D004429 4.1e-06 56.6 227 25.6
Oeu001813.1 Olea europaea HOM05D003731 ORTHO05D004429 4.1e-06 56.6 226 24.8
PSO170G0363 Papaver somniferum HOM05D003731 ORTHO05D004429 4.1e-06 56.6 227 25.6
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 7.0e-06 55.8 70 44.3
Aqoxy7G02835 Aquilegia oxysepala HOM05D003731 ORTHO05D004429 9.2e-06 55.5 225 24.9


User provided reference genes

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