Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 3.0e-57 224.9 112 100.0
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 6.0e-50 200.7 111 91.9
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 8.7e-49 196.8 109 89.9
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.1e-48 196.4 110 89.1
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.5e-48 196.1 110 89.1
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 3.7e-47 191.4 109 86.2
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 6.3e-47 190.7 109 86.2
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 3.1e-46 188.3 108 86.1
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.1e-43 179.9 108 83.3
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 7.2e-43 177.2 110 80.0
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 4.5e-37 157.9 109 70.6
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 1.2e-34 149.8 104 73.1
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.7e-34 148.7 106 68.9
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 3.6e-34 148.3 111 65.8
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 3.6e-34 148.3 108 68.5
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 4.7e-34 147.9 106 68.9
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 6.1e-34 147.5 104 69.2
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 7.9e-34 147.1 105 70.5
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 1.0e-33 146.7 105 70.5
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.4e-33 146.4 102 70.6
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.4e-33 146.4 106 69.8
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 1.8e-33 146.0 101 69.3
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 1.8e-33 146.0 102 72.5
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 1.8e-33 146.0 104 70.2
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 2.3e-33 145.6 107 66.4
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 3.9e-33 144.8 101 71.3
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 3.9e-33 144.8 102 68.6
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 3.9e-33 144.8 102 69.6
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 6.7e-33 144.1 102 67.6
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.1e-32 143.3 102 67.6
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 1.5e-32 142.9 102 68.6
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 1.5e-32 142.9 102 70.6
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 2.0e-32 142.5 102 69.6
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 2.0e-32 142.5 102 68.6
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 2.6e-32 142.1 105 66.7
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 4.4e-32 141.4 104 69.2
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 5.7e-32 141.0 102 67.6
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 5.7e-32 141.0 102 67.6
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 5.7e-32 141.0 107 65.4
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 5.7e-32 141.0 102 66.7
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 7.4e-32 140.6 102 66.7
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 7.4e-32 140.6 107 64.5
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 9.7e-32 140.2 104 66.3
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.3e-31 139.8 101 66.3
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 1.3e-31 139.8 105 66.7
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.7e-31 139.4 104 70.2
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 1.7e-31 139.4 102 67.6
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.7e-31 139.4 102 65.7
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.2e-31 139.0 104 65.4
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 2.2e-31 139.0 102 65.7
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 2.2e-31 139.0 105 66.7
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 2.2e-31 139.0 102 67.6
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 2.2e-31 139.0 105 66.7
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 2.2e-31 139.0 102 66.7
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 2.8e-31 138.7 104 66.3
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.8e-31 138.7 101 69.3
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 4.8e-31 137.9 104 63.5
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 4.8e-31 137.9 101 69.3
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 8.2e-31 137.1 104 63.5
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 8.2e-31 137.1 102 65.7
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 8.2e-31 137.1 103 68.0
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 8.2e-31 137.1 99 67.7
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 8.2e-31 137.1 102 68.6
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 8.2e-31 137.1 102 68.6
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.1e-30 136.7 124 58.9
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.1e-30 136.7 112 62.5
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 1.1e-30 136.7 102 66.7
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 1.4e-30 136.3 104 63.5
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 1.4e-30 136.3 105 62.9
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 101 66.3
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 1.8e-30 136.0 102 67.6
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 1.8e-30 136.0 102 67.6
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 2.4e-30 135.6 106 62.3
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.1e-30 135.2 101 68.3
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.1e-30 135.2 103 69.9
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.1e-30 135.2 103 69.9
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 4.1e-30 134.8 102 64.7
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 4.1e-30 134.8 101 68.3
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 5.3e-30 134.4 102 64.7
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.3e-30 134.4 101 66.3
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 5.3e-30 134.4 107 61.7
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 5.3e-30 134.4 102 67.6
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 5.3e-30 134.4 102 63.7
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 6.9e-30 134.0 100 65.0
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 6.9e-30 134.0 133 56.4
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 9.1e-30 133.7 102 66.7
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 9.1e-30 133.7 103 68.9
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 9.1e-30 133.7 103 68.9
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 1.2e-29 133.3 102 66.7
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 1.5e-29 132.9 102 63.7
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 2.0e-29 132.5 104 63.5
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.6e-29 132.1 104 63.5
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 2.6e-29 132.1 102 63.7
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 2.6e-29 132.1 102 63.7
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 2.6e-29 132.1 102 63.7
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.4e-29 131.7 106 60.4
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 3.4e-29 131.7 105 61.0
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 4.5e-29 131.3 102 66.7
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 4.5e-29 131.3 107 62.6
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 5.9e-29 131.0 102 63.7
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.0e-28 130.2 98 67.3
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.0e-28 130.2 102 63.7
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 1.7e-28 129.4 102 64.7
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.7e-28 129.4 104 61.5
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 2.2e-28 129.0 105 63.8
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 2.9e-28 128.6 102 60.8
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 2.9e-28 128.6 104 63.5
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 5.0e-28 127.9 101 62.4
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 5.0e-28 127.9 103 63.1
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 6.5e-28 127.5 104 61.5
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 1.9e-27 125.9 107 60.7
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 1.9e-27 125.9 107 60.7
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.2e-26 123.2 102 62.7
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.6e-26 122.9 103 60.2
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 1.6e-26 122.9 102 61.8
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 3.6e-26 121.7 108 55.6
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 3.3e-24 115.2 105 60.0
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 3.7e-23 111.7 102 57.8
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 7.0e-22 107.5 102 55.9
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 3.8e-20 101.7 88 60.2
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 3.6e-18 95.1 77 62.3
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 1.0e-17 93.6 58 75.9
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 2.3e-17 92.4 98 48.0
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 2.3e-17 92.4 111 45.9
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 3.3e-16 88.6 102 43.1
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 4.1e-14 81.6 102 43.1
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 5.3e-14 81.3 68 57.4
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 9.1e-14 80.5 68 57.4
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 5.9e-13 77.8 69 58.0
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 6.5e-12 74.3 66 54.5
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.1e-11 73.6 66 54.5
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 6.1e-10 67.8 68 54.4
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 8.0e-10 67.4 78 48.7
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 1.5e-08 63.2 102 41.2
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 7.5e-08 60.8 82 46.3


User provided reference genes

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