Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 5.7e-83 310.8 154 100.0
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 7.2e-78 293.9 154 92.2
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 4.7e-77 291.2 154 91.6
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 1.0e-76 290.0 154 90.9
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 1.8e-76 289.3 154 90.9
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 7.5e-75 283.9 162 86.4
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 8.8e-68 260.4 153 81.0
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 1.2e-67 260.0 153 79.7
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 2.6e-67 258.8 153 79.1
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 5.7e-67 257.7 153 79.7
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 5.7e-67 257.7 153 79.7
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 5.7e-67 257.7 153 78.4
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 7.5e-67 257.3 151 80.8
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 7.5e-67 257.3 153 78.4
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 9.8e-67 256.9 151 80.8
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 2.2e-66 255.8 153 79.1
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 2.2e-66 255.8 153 79.1
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 2.2e-66 255.8 153 79.1
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 2.8e-66 255.4 153 79.1
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 2.8e-66 255.4 153 78.4
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 2.8e-66 255.4 156 78.8
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 2.8e-66 255.4 153 78.4
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 2.8e-66 255.4 151 78.8
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 4.9e-66 254.6 151 78.1
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 4.9e-66 254.6 152 79.6
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 6.3e-66 254.2 152 79.6
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 6.3e-66 254.2 153 79.1
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 1.1e-65 253.4 153 77.8
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 1.1e-65 253.4 153 76.5
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 1.8e-65 252.7 153 77.1
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 2.4e-65 252.3 153 78.4
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 3.1e-65 251.9 153 77.8
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 3.1e-65 251.9 157 77.1
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 4.1e-65 251.5 153 78.4
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 4.1e-65 251.5 153 78.4
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 5.4e-65 251.1 154 77.3
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 5.4e-65 251.1 148 79.1
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 5.4e-65 251.1 153 77.1
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 7.0e-65 250.8 153 78.4
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 7.0e-65 250.8 153 78.4
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 9.1e-65 250.4 150 78.7
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 1.2e-64 250.0 153 77.8
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 1.2e-64 250.0 151 78.1
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 1.2e-64 250.0 152 77.0
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 1.2e-64 250.0 149 79.9
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 1.2e-64 250.0 153 78.4
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 1.6e-64 249.6 153 76.5
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.6e-64 249.6 150 80.7
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 2.0e-64 249.2 154 76.6
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 3.5e-64 248.4 148 79.7
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 4.5e-64 248.1 153 75.8
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 4.5e-64 248.1 152 76.3
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 7.7e-64 247.3 150 77.3
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 1.0e-63 246.9 151 76.2
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 1.0e-63 246.9 156 77.6
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 1.7e-63 246.1 155 76.1
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 1.7e-63 246.1 166 71.7
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 1.7e-63 246.1 166 71.7
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 2.3e-63 245.7 154 76.0
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 2.3e-63 245.7 148 78.4
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 5.0e-63 244.6 148 79.1
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 8.6e-63 243.8 148 77.0
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 8.6e-63 243.8 150 76.7
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 1.1e-62 243.4 152 75.7
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 2.5e-62 242.3 148 77.7
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 4.2e-62 241.5 151 75.5
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 9.5e-62 240.4 151 75.5
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 2.1e-61 239.2 153 74.5
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 2.8e-61 238.8 151 73.5
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 2.8e-61 238.8 155 77.4
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 5.2e-60 234.6 153 76.5
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 5.2e-60 234.6 153 75.8
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 2.6e-59 232.3 138 81.9
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 1.3e-58 229.9 156 74.4
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 3.7e-58 228.4 148 75.7
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 1.1e-57 226.9 155 71.0
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 7.0e-57 224.2 172 68.0
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 1.3e-55 219.9 148 70.9
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 6.6e-55 217.6 156 71.2
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 6.6e-55 217.6 151 68.9
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 1.1e-54 216.9 207 58.5
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 2.5e-54 215.7 136 75.0
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 3.3e-54 215.3 148 70.9
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 9.5e-54 213.8 134 75.4
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 9.5e-54 213.8 134 75.4
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 1.2e-53 213.4 138 71.0
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 2.1e-53 212.6 156 67.9
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 2.1e-53 212.6 152 71.1
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 4.0e-52 208.4 129 76.7
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 5.2e-52 208.0 124 79.8
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 3.4e-51 205.3 124 79.0
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 7.5e-51 204.1 148 66.2
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.3e-50 203.4 151 69.5
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 4.7e-45 184.9 116 74.1
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 1.2e-43 180.3 170 58.8
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 1.2e-43 180.3 108 75.0
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 3.4e-43 178.7 153 61.4
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 2.2e-42 176.0 102 79.4
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 3.7e-42 175.3 153 61.4
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 6.0e-40 167.9 153 59.5
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 5.1e-39 164.9 152 54.6
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 1.9e-38 162.9 127 66.1
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 1.6e-37 159.8 162 53.1
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 4.1e-33 145.2 86 79.1
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 6.0e-32 141.4 148 48.0
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 6.0e-32 141.4 86 76.7
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 1.0e-31 140.6 88 75.0
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 3.9e-31 138.7 79 77.2
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 5.2e-28 128.3 149 47.0
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 1.5e-19 100.1 57 82.5
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-19 98.2 72 66.7
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 6.6e-15 84.7 79 57.0
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 2.7e-08 62.8 42 71.4


User provided reference genes

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