Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 0.0e+00 1157.1 568 100.0
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 0.0e+00 1100.5 568 93.3
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 0.0e+00 1096.3 552 94.2
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 0.0e+00 1083.9 554 92.1
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 0.0e+00 1081.2 551 93.6
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 534 94.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 568 87.0
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 568 87.0
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.7e-303 1044.6 568 87.0
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 552 88.6
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 9.5e-301 1036.2 568 86.4
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 9.5e-301 1036.2 564 86.5
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 568 86.1
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 568 85.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 568 85.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 552 87.7
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 568 85.4
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 568 85.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 568 85.4
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 567 84.7
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 568 85.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 563 86.1
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 567 85.0
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 563 86.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 552 87.3
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 568 85.7
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 567 84.7
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 568 85.4
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 564 85.3
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 563 85.8
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.2e-295 1019.2 552 87.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 567 84.7
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 563 85.4
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 568 84.9
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.6e-295 1017.3 563 85.6
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 568 84.7
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.0e-294 1016.1 563 85.3
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.7e-294 1015.4 552 86.2
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.0e-294 1014.6 563 85.4
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 552 87.3
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 552 85.9
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 568 84.7
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.5e-293 1012.3 550 86.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.3e-293 1011.1 565 84.4
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 568 84.0
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 568 84.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 7.3e-293 1010.0 568 84.3
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.2e-292 1009.2 568 84.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 552 86.1
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 552 86.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.1e-291 1006.1 568 84.3
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 567 84.1
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 568 83.5
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 571 84.1
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 568 83.3
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 567 84.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 568 83.6
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.7e-289 998.8 568 83.1
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.9e-289 998.0 568 83.1
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.9e-289 998.0 568 83.1
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.7e-289 997.7 568 82.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 6.4e-289 996.9 568 83.1
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 6.4e-289 996.9 554 84.5
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.9e-288 995.3 568 82.9
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.6e-287 992.3 568 82.2
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.5e-287 991.1 564 82.6
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 5.0e-286 987.3 552 83.7
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 5.0e-286 987.3 552 83.7
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.5e-285 985.7 550 84.0
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.3e-285 984.6 565 81.4
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 5.6e-285 983.8 568 81.9
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.5e-285 983.0 564 82.6
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.2e-284 982.6 566 82.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.1e-284 981.9 550 82.9
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.2e-284 980.3 549 83.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.0e-283 977.6 571 81.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.2e-282 976.1 549 83.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-282 975.7 553 84.3
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 5.8e-282 973.8 570 81.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.5e-282 973.4 567 81.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.7e-281 971.1 567 81.7
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.7e-281 971.1 569 79.4
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.6e-279 965.7 565 80.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 4.6e-279 964.1 553 82.3
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.0e-279 963.8 565 78.8
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.0e-278 963.0 565 79.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.0e-278 963.0 556 80.9
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.0e-278 963.0 571 80.4
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.0e-278 961.4 556 81.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 3.9e-278 961.1 564 80.3
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-277 958.0 570 80.9
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 3.3e-277 958.0 568 80.5
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.3e-277 957.6 571 79.5
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 5.6e-277 957.2 564 80.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.2e-276 956.1 565 80.0
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.6e-276 955.7 564 79.8
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-276 955.3 564 80.3
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.8e-276 954.9 565 77.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 80.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 80.1
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 80.1
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 80.1
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-276 953.7 564 79.6
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 6.2e-276 953.7 564 79.6
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.1e-276 953.4 564 80.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.1e-275 953.0 564 79.8
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-275 951.8 564 80.0
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.4e-275 951.8 568 78.5
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.4e-275 951.8 564 79.4
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 4.0e-275 951.0 564 79.8
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.5e-274 949.1 564 78.7
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.6e-274 948.3 568 78.3
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 4.4e-274 947.6 552 81.0
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.8e-274 947.2 568 78.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.7e-273 945.7 564 79.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.4e-272 942.6 553 80.5
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.9e-272 942.2 565 79.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 3.2e-272 941.4 553 80.3
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.2e-272 941.4 552 81.2
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 4.1e-272 941.0 564 78.7
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.1e-271 938.7 552 81.2
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-270 936.0 553 80.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.3e-270 935.3 568 77.3
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.0e-270 934.9 564 78.5
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.2e-268 929.5 564 77.1
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.1e-267 924.9 554 80.7
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.4e-258 894.8 567 74.6
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 9.9e-258 893.3 568 76.9
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.8e-257 891.3 524 80.3
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 8.4e-257 890.2 569 75.2
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-252 875.9 553 75.8
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.1e-252 875.5 564 72.7
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 6.4e-249 864.0 565 72.7
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.4e-248 862.8 554 77.1
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-246 856.3 574 70.9
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 8.7e-246 853.6 551 73.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.8e-244 847.8 565 71.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 6.9e-235 817.4 564 69.1
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.2e-233 812.4 469 80.0
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 8.0e-215 750.7 418 85.9
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-209 733.4 425 81.2
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.7e-206 721.1 563 64.3
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 5.3e-203 711.4 567 63.3
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.3e-188 661.0 373 81.5
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.2e-180 636.3 535 56.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.1e-166 589.3 318 83.6
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.7e-164 582.4 417 70.7
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 5.4e-163 578.6 522 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.3e-161 573.9 488 53.9
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.1e-159 566.6 567 57.1
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.9e-157 557.8 568 55.6
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 8.7e-153 544.7 292 83.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.9e-147 526.9 414 58.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.9e-132 475.7 318 73.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-123 447.6 457 53.6
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-83 313.9 549 37.7
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 9.4e-83 312.0 213 69.5
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 4.4e-80 303.1 491 35.8
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-63 248.4 142 76.8
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-62 245.4 142 76.1
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 2.4e-62 244.2 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.6e-52 209.1 132 75.8
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.8e-49 201.4 133 77.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.7e-47 193.7 128 77.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.7e-45 187.6 119 70.6
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-44 184.9 166 60.2
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.6e-44 183.0 166 60.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-43 182.2 166 60.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-42 178.7 166 59.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.9e-38 164.9 323 33.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.5e-35 154.5 95 77.9
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.4e-33 148.7 495 25.7
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.0e-32 144.8 87 74.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-29 134.8 213 41.3
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 7.9e-29 132.9 90 66.7
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.8e-26 124.4 75 72.0
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-21 108.6 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-21 106.7 166 42.2
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.1e-17 94.4 59 62.7
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-11 75.5 46 69.6
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 7.1e-06 56.6 40 75.0


User provided reference genes

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