Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 0.0e+00 3393.6 1743 100.0
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 2782.7 1760 83.0
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 2741.8 1760 82.0
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 2132.1 1678 69.4
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 1995.3 1757 64.3
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 1797.3 1350 73.4
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1239.2 1764 45.9
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1209.1 1761 44.1
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1192.2 1760 43.9
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 0.0e+00 1139.4 1692 42.9
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1100.5 1791 41.9
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 3.8e-300 1035.8 1782 41.0
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 9.4e-299 1031.2 1710 40.8
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 1.4e-297 1027.3 1800 40.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 6.7e-289 998.4 1723 41.0
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 3.1e-286 989.6 2077 35.7
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.2e-284 983.4 1382 44.3
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 5.3e-278 962.2 1803 38.4
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 2.0e-277 960.3 1618 40.8
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.9e-275 953.7 1767 39.0
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.5e-275 953.4 1779 37.9
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.3e-268 931.0 1783 37.5
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 7.2e-267 925.2 1781 37.0
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 9.4e-267 924.9 1771 38.7
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.0e-265 921.4 1290 44.5
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 8.8e-265 918.3 1792 37.5
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.5e-264 917.5 1206 49.8
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 2.0e-264 917.1 1773 37.5
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 1.4e-262 911.0 1780 37.5
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.0e-261 907.1 1895 36.3
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 4.5e-261 906.0 1773 37.3
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 5.9e-261 905.6 1771 37.3
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 7.7e-261 905.2 1761 37.3
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 4.7e-258 896.0 1678 38.3
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.4e-257 894.4 1832 37.0
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.1e-254 884.8 1777 36.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.9e-252 876.7 1415 40.3
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 9.2e-246 855.1 1792 37.5
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 8.6e-244 848.6 1871 36.0
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.4e-240 836.6 1825 36.4
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.9e-239 833.6 1823 35.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-238 830.9 1835 36.2
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.4e-238 830.5 1825 36.3
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 5.4e-238 829.3 1758 36.1
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 7.8e-237 825.5 1772 35.5
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.3e-235 818.9 1784 35.4
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.3e-233 813.9 1773 35.0
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.3e-233 813.9 1773 35.0
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.7e-231 807.7 1804 35.6
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 3.7e-231 806.6 1769 34.4
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.4e-231 805.8 1267 40.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.1e-230 805.1 1754 35.3
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 9.2e-230 802.0 1816 35.6
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.0e-228 797.0 1665 35.1
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 2.5e-227 793.9 1276 39.7
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 1.6e-226 791.2 1782 35.1
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.1e-226 790.8 1789 35.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 5.2e-225 786.2 1773 34.5
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.8e-225 785.8 1661 35.3
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 2.0e-224 784.3 1282 39.6
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 4.4e-224 783.1 1762 34.2
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.7e-223 781.2 1803 33.8
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.9e-222 777.7 1283 39.2
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 5.4e-222 776.2 1890 33.8
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 9.3e-222 775.4 1790 34.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.0e-220 771.9 1833 33.9
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.3e-220 770.8 1572 36.3
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.1e-218 764.2 1745 35.7
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 7.6e-216 755.7 1768 34.9
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.8e-209 734.6 1765 34.6
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 7.1e-206 722.6 1758 33.7
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.5e-203 714.9 1766 33.5
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 3.4e-200 703.7 1761 33.3
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.7e-199 701.4 1713 34.1
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.1e-187 662.1 1763 32.3
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 8.2e-186 656.0 814 46.1
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 9.0e-185 652.5 1762 32.2
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 2.6e-184 651.0 1765 32.9
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 4.5e-184 650.2 1766 32.4
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 5.0e-183 646.7 1745 32.8
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 5.5e-182 643.3 897 40.7
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.1e-179 635.6 1763 32.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 5.7e-179 633.3 1772 32.8
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 3.7e-178 630.6 1770 32.5
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 5.9e-176 623.2 1297 35.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 8.5e-175 619.4 1759 32.4
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.1e-174 619.0 1783 32.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.8e-172 611.7 665 49.3
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 3.7e-170 604.0 676 48.4
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 8.0e-165 586.3 748 43.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.1e-163 582.4 1613 31.9
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.3e-162 578.9 1553 33.9
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.5e-158 565.5 637 49.3
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 7.2e-150 536.6 1296 31.5
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.4e-147 527.7 1565 31.0
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 3.1e-145 521.2 1807 28.7
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.1e-116 426.4 905 32.4
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.2e-91 343.2 617 36.0
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.9e-90 338.6 440 44.3
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 4.6e-80 304.7 902 28.8
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 6.3e-77 294.3 1139 29.8
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 2.5e-73 282.3 454 35.9
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 4.2e-73 281.6 1242 28.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 3.6e-72 278.5 654 32.6
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 8.5e-66 257.3 538 32.7
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 3.7e-61 241.9 841 26.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.5e-59 236.5 614 34.0
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.7e-58 233.0 847 28.1
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.9e-50 205.7 818 28.9
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.6e-43 183.3 1194 24.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.6e-32 145.6 671 29.7
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 2.7e-27 129.4 134 44.8
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.9e-25 123.2 750 26.3
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.6e-24 120.2 127 43.3
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.0e-18 100.9 339 31.3
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 4.9e-13 82.0 127 42.5
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 2.3e-10 73.2 300 27.3
Peaxi162Scf00060g00125 Petunia axillaris HOM05D006083 ORTHO05D007634 3.0e-10 72.8 114 47.4
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 5.6e-09 68.6 110 36.4
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 2.3e-07 63.2 126 34.1
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.1e-07 62.8 459 25.9
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.4e-06 58.9 79 40.5


User provided reference genes

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