Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 1.3e-28 129.0 63 100.0
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 1.7e-25 118.6 63 87.3
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 1.7e-25 118.6 63 87.3
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 8.7e-22 106.3 61 78.7
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 9.6e-21 102.8 63 77.8
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.6e-20 102.1 63 73.0
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 2.1e-20 101.7 63 71.4
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 1.1e-19 99.4 63 71.4
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 1.4e-19 99.0 62 69.4
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 1.8e-19 98.6 64 71.9
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 5.3e-19 97.1 64 70.3
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 5.3e-19 97.1 63 69.8
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 5.3e-19 97.1 64 70.3
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 9.0e-19 96.3 60 71.7
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 3.4e-18 94.4 58 72.4
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 4.5e-18 94.0 63 68.3
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 1.0e-17 92.8 62 67.7
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 1.7e-17 92.0 63 68.3
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 3.8e-17 90.9 63 68.3
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 3.8e-17 90.9 59 71.2
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 5.0e-17 90.5 62 62.9
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 6.5e-17 90.1 64 64.1
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 6.5e-17 90.1 61 65.6
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.1e-16 89.4 59 66.1
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 1.1e-16 89.4 59 66.1
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 1.4e-16 89.0 63 65.1
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.4e-16 89.0 59 64.4
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 1.4e-16 89.0 64 62.5
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 1.9e-16 88.6 63 68.3
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 4.2e-16 87.4 61 63.9
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 4.2e-16 87.4 61 63.9
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 7.2e-16 86.7 58 69.0
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 9.3e-16 86.3 61 67.2
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 1.2e-15 85.9 63 61.9
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.6e-15 85.5 59 62.7
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 1.6e-15 85.5 61 62.3
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 1.6e-15 85.5 61 65.6
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 2.7e-15 84.7 63 65.1
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 4.6e-15 84.0 62 61.3
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 4.6e-15 84.0 60 65.0
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 6.1e-15 83.6 63 65.1
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 6.1e-15 83.6 49 75.5
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 7.9e-15 83.2 51 68.6
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 1.8e-14 82.0 59 64.4
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 2.3e-14 81.6 61 65.6
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 3.0e-14 81.3 56 67.9
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 5.1e-14 80.5 55 63.6
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 6.7e-14 80.1 60 58.3
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 6.7e-14 80.1 43 83.7
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 1.1e-13 79.3 58 63.8
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 1.5e-13 79.0 47 68.1
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 1.9e-13 78.6 66 57.6
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 4.3e-13 77.4 61 62.3
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 5.7e-13 77.0 58 60.3
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 5.7e-13 77.0 43 76.7
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 7.4e-13 76.6 59 64.4
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 7.4e-13 76.6 58 65.5
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 9.7e-13 76.3 47 72.3
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 1.3e-12 75.9 58 69.0
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 1.6e-12 75.5 52 67.3
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 2.2e-12 75.1 54 66.7
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 2.2e-12 75.1 50 68.0
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 8.2e-12 73.2 52 67.3
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 8.2e-12 73.2 51 66.7
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 1.1e-11 72.8 59 61.0
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 1.1e-11 72.8 59 61.0
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 1.8e-11 72.0 62 56.5
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 1.8e-11 72.0 62 56.5
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 1.8e-11 72.0 59 61.0
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 1.8e-11 72.0 62 56.5
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 1.8e-11 72.0 59 61.0
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 1.8e-11 72.0 62 56.5
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 1.8e-11 72.0 62 56.5
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 1.8e-11 72.0 43 72.1
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 2.4e-11 71.6 54 55.6
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 4.1e-11 70.9 52 63.5
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 5.3e-11 70.5 42 76.2
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 5.3e-11 70.5 80 48.8
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 1.5e-10 68.9 45 66.7
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 1.5e-10 68.9 43 72.1
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 2.0e-10 68.6 48 68.8
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 5.9e-10 67.0 44 68.2
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 2.2e-09 65.1 52 61.5
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 8.5e-09 63.2 58 55.2
Pp3c3_14890 Physcomitrium patens HOM05D007860 ORTHO05D009950 3.9e-06 54.3 50 58.0


User provided reference genes

Program Settings