Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G785.7 Capsicum annuum HOM05D003780 ORTHO05D004463 1.2e-160 569.7 267 100.0
Nitab4.5_0001912g0010 Nicotiana tabacum HOM05D003780 ORTHO05D004463 7.5e-123 444.1 215 93.5
Nitab4.5_0005814g0030 Nicotiana tabacum HOM05D003780 ORTHO05D004463 1.8e-121 439.5 215 92.1
Solyc03g033620.3 Solanum lycopersicum HOM05D003780 ORTHO05D004463 1.2e-115 420.2 215 89.8
Sopen03g006410 Solanum pennellii HOM05D003780 ORTHO05D004463 5.7e-115 417.9 215 89.3
Rhsim10G0214200 Rhododendron simsii HOM05D003780 ORTHO05D004463 4.6e-104 381.7 218 76.6
Migut.H02478 Erythranthe guttata HOM05D003780 ORTHO05D004463 2.3e-103 379.4 215 77.7
CSS0017089 Camellia sinensis var. sinensis HOM05D003780 ORTHO05D004463 5.0e-103 378.3 216 77.3
FAN28G2406 Fragaria x ananassa HOM05D003780 ORTHO05D004463 1.6e-101 373.2 217 76.5
GSVIVG01018819001 Vitis vinifera HOM05D003780 ORTHO05D004463 1.4e-100 370.2 215 75.8
RcHm_v2.0_Chr2g0099781 Rosa chinensis HOM05D003780 ORTHO05D004463 3.1e-100 369.0 216 76.4
Haze_03805 Corylus avellana HOM05D003780 ORTHO05D004463 4.0e-100 368.6 226 73.0
Duzib187G0337 Durio zibethinus HOM05D003780 ORTHO05D004463 5.2e-100 368.2 216 76.4
Ciclev10025467m.g Citrus clementina HOM05D003780 ORTHO05D004463 8.9e-100 367.5 217 73.7
unitig_60.g25535 Utricularia gibba HOM05D003780 ORTHO05D004463 8.9e-100 367.5 215 75.3
QL06p033947 Quercus lobata HOM05D003780 ORTHO05D004463 1.2e-99 367.1 216 75.9
Cc07_g10460 Coffea canephora HOM05D003780 ORTHO05D004463 1.5e-99 366.7 215 75.8
FAN26G1155 Fragaria x ananassa HOM05D003780 ORTHO05D004463 2.0e-99 366.3 216 75.9
Cfa006947 Carpinus fangiana HOM05D003780 ORTHO05D004463 2.6e-99 365.9 216 75.5
COL.COLO4_21956 Corchorus olitorius HOM05D003780 ORTHO05D004463 4.4e-99 365.2 217 76.0
MD02G1110800 Malus domestica HOM05D003780 ORTHO05D004463 4.4e-99 365.2 216 75.9
FvH4_1g12120 Fragaria vesca HOM05D003780 ORTHO05D004463 5.8e-99 364.8 216 75.9
TAR376G0185 Trochodendron aralioides HOM05D003780 ORTHO05D004463 5.8e-99 364.8 215 74.4
Thecc.01G022600 Theobroma cacao HOM05D003780 ORTHO05D004463 9.8e-99 364.0 215 75.3
Manes.01G143200 Manihot esculenta HOM05D003780 ORTHO05D004463 1.7e-98 363.2 215 75.3
Gohir.A11G177800 Gossypium hirsutum HOM05D003780 ORTHO05D004463 2.9e-98 362.5 215 74.4
Gohir.D11G185500 Gossypium hirsutum HOM05D003780 ORTHO05D004463 3.7e-98 362.1 215 74.0
Gorai.007G197100 Gossypium raimondii HOM05D003780 ORTHO05D004463 3.7e-98 362.1 215 74.0
PSO541G5535 Papaver somniferum HOM05D003780 ORTHO05D004463 1.1e-97 360.5 216 73.6
PSO675G4130 Papaver somniferum HOM05D003780 ORTHO05D004463 1.1e-97 360.5 216 73.6
Prupe.7G165600 Prunus persica HOM05D003780 ORTHO05D004463 1.4e-97 360.1 216 73.6
Dinv40062 Davidia involucrata HOM05D003780 ORTHO05D004463 3.2e-97 359.0 215 74.4
Ca_22363_v3 Cicer arietinum L. HOM05D003780 ORTHO05D004463 4.1e-97 358.6 216 73.6
Lalb_Chr05g0229921 Lupinus albus HOM05D003780 ORTHO05D004463 5.4e-97 358.2 216 74.1
HanXRQChr14g0441661 Helianthus annuus HOM05D003780 ORTHO05D004463 7.1e-97 357.8 215 73.5
MD15G1248700 Malus domestica HOM05D003780 ORTHO05D004463 7.1e-97 357.8 218 73.4
Medtr8g076210 Medicago truncatula HOM05D003780 ORTHO05D004463 7.1e-97 357.8 216 73.1
Aqoxy6G02377 Aquilegia oxysepala HOM05D003780 ORTHO05D004463 2.1e-96 356.3 223 70.4
ECA238G4346 Erigeron canadensis HOM05D003780 ORTHO05D004463 2.1e-96 356.3 214 73.8
Atru.chr3.771 Acer truncatum HOM05D003780 ORTHO05D004463 6.0e-96 354.8 216 73.6
FAN23G1382 Fragaria x ananassa HOM05D003780 ORTHO05D004463 1.0e-95 354.0 239 69.0
MSTRG.23285 Avicennia marina HOM05D003780 ORTHO05D004463 1.3e-95 353.6 216 73.6
Glyma.16G130700 Glycine max HOM05D003780 ORTHO05D004463 1.3e-95 353.6 216 73.1
Glyma.16G130900 Glycine max HOM05D003780 ORTHO05D004463 1.7e-95 353.2 216 74.1
Lj4g0017051 Lotus japonicus HOM05D003780 ORTHO05D004463 1.7e-95 353.2 215 73.5
EL10As8g23845 Beta vulgaris HOM05D003780 ORTHO05D004463 5.1e-95 351.7 216 72.7
Sc03g0003480 Simmondsia chinensis HOM05D003780 ORTHO05D004463 5.1e-95 351.7 216 72.7
MELO3C016371.2 Cucumis melo HOM05D003780 ORTHO05D004463 6.6e-95 351.3 215 73.5
Duzib147G1231 Durio zibethinus HOM05D003780 ORTHO05D004463 1.9e-94 349.7 215 71.6
CANSAT01G0600 Cannabis sativa HOM05D003780 ORTHO05D004463 2.5e-94 349.4 212 75.0
CiPaw.07G056300 Carya illinoinensis HOM05D003780 ORTHO05D004463 2.5e-94 349.4 217 71.0
Manes.02G101700 Manihot esculenta HOM05D003780 ORTHO05D004463 2.5e-94 349.4 214 73.8
Hund14033 Selenicereus undatus HOM05D003780 ORTHO05D004463 4.3e-94 348.6 216 70.8
TPR.G2383 Trifolium pratense HOM05D003780 ORTHO05D004463 4.3e-94 348.6 220 69.5
Phvul.003G259700 Phaseolus vulgaris HOM05D003780 ORTHO05D004463 5.6e-94 348.2 216 72.2
Ca_24899_v3 Cicer arietinum L. HOM05D003780 ORTHO05D004463 9.5e-94 347.4 215 72.1
CSS0028269 Camellia sinensis var. sinensis HOM05D003780 ORTHO05D004463 1.6e-93 346.7 216 73.1
Eucgr.J02399 Eucalyptus grandis HOM05D003780 ORTHO05D004463 1.6e-93 346.7 216 72.2
Psat2g155880 Pisum sativum HOM05D003780 ORTHO05D004463 2.8e-93 345.9 217 71.0
Medtr5g021530 Medicago truncatula HOM05D003780 ORTHO05D004463 4.7e-93 345.1 216 71.3
Nn5g29227 Nelumbo nucifera HOM05D003780 ORTHO05D004463 4.7e-93 345.1 218 70.6
CiPaw.08G135200 Carya illinoinensis HOM05D003780 ORTHO05D004463 8.1e-93 344.4 216 70.8
AUR62007654 Chenopodium quinoa HOM05D003780 ORTHO05D004463 8.1e-93 344.4 226 71.7
Hma1.2p1_0743F.1_g211480 Hydrangea macrophylla HOM05D003780 ORTHO05D004463 8.1e-93 344.4 210 74.8
Sabra07G0012400 Salix brachista HOM05D003780 ORTHO05D004463 8.1e-93 344.4 214 71.0
Potri.007G015400 Populus trichocarpa HOM05D003780 ORTHO05D004463 1.1e-92 344.0 214 71.0
THA.LOC104807484 Tarenaya hassleriana HOM05D003780 ORTHO05D004463 1.1e-92 344.0 215 70.2
Psat4g097480 Pisum sativum HOM05D003780 ORTHO05D004463 1.4e-92 343.6 216 71.8
Sp7g33940 Schrenkiella parvula HOM05D003780 ORTHO05D004463 1.4e-92 343.6 214 69.2
BcaNung00751 Brassica carinata HOM05D003780 ORTHO05D004463 1.8e-92 343.2 215 69.3
C01p02740 Brassica napus HOM05D003780 ORTHO05D004463 1.8e-92 343.2 215 69.3
BolC1t00264H Brassica oleracea HOM05D003780 ORTHO05D004463 1.8e-92 343.2 215 69.3
A01p02560 Brassica napus HOM05D003780 ORTHO05D004463 2.3e-92 342.8 215 69.8
CsaV3_4G005800 Cucumis sativus L. HOM05D003780 ORTHO05D004463 2.3e-92 342.8 215 71.2
BcaNung03015 Brassica carinata HOM05D003780 ORTHO05D004463 4.0e-92 342.0 214 68.7
C07p61590 Brassica napus HOM05D003780 ORTHO05D004463 4.0e-92 342.0 214 68.7
BolC7t46582H Brassica oleracea HOM05D003780 ORTHO05D004463 4.0e-92 342.0 214 68.7
PGR102G0875 Punica granatum HOM05D003780 ORTHO05D004463 5.2e-92 341.7 216 69.0
BcaNung04791 Brassica carinata HOM05D003780 ORTHO05D004463 6.8e-92 341.3 214 68.2
TWI73G1264 Tripterygium wilfordii HOM05D003780 ORTHO05D004463 6.8e-92 341.3 216 73.1
Sed0002051 Sechium edule HOM05D003780 ORTHO05D004463 8.9e-92 340.9 215 70.2
Lj2g0008626 Lotus japonicus HOM05D003780 ORTHO05D004463 2.0e-91 339.7 216 72.7
A03p64110 Brassica napus HOM05D003780 ORTHO05D004463 2.6e-91 339.3 214 68.2
BraA03t15476Z Brassica rapa HOM05D003780 ORTHO05D004463 2.6e-91 339.3 214 68.2
Thhalv10025043m.g Eutrema salsugineum HOM05D003780 ORTHO05D004463 2.6e-91 339.3 214 68.7
Gohir.D11G185400 Gossypium hirsutum HOM05D003780 ORTHO05D004463 2.6e-91 339.3 217 70.0
TWI09G0133 Tripterygium wilfordii HOM05D003780 ORTHO05D004463 3.4e-91 339.0 216 71.3
CARHR244600 Cardamine hirsuta HOM05D003780 ORTHO05D004463 4.4e-91 338.6 214 68.2
Carub.0007s0404 Capsella rubella HOM05D003780 ORTHO05D004463 5.8e-91 338.2 214 68.2
Gorai.007G197000 Gossypium raimondii HOM05D003780 ORTHO05D004463 7.6e-91 337.8 215 69.8
HanXRQChr16g0531091 Helianthus annuus HOM05D003780 ORTHO05D004463 7.6e-91 337.8 213 70.9
Aa31LG6G13100 Aethionema arabicum HOM05D003780 ORTHO05D004463 2.2e-90 336.3 215 66.5
AL7G14860 Arabidopsis lyrata HOM05D003780 ORTHO05D004463 3.7e-90 335.5 214 68.2
THA.LOC104804255 Tarenaya hassleriana HOM05D003780 ORTHO05D004463 6.4e-90 334.7 214 67.3
Potri.007G015300 Populus trichocarpa HOM05D003780 ORTHO05D004463 1.1e-89 334.0 215 68.8
DCAR_025992 Daucus carota HOM05D003780 ORTHO05D004463 1.4e-89 333.6 237 65.8
HPP92_020998 Vanilla planifolia HOM05D003780 ORTHO05D004463 1.4e-89 333.6 217 68.7
Actinidia26076 Actinidia chinensis HOM05D003780 ORTHO05D004463 2.4e-89 332.8 192 76.6
ATR0149G013 Amborella trichopoda HOM05D003780 ORTHO05D004463 4.1e-89 332.0 218 67.4
AT4G36195 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 5.4e-89 331.6 214 66.8
CDE09G1412 Ceratophyllum demersum HOM05D003780 ORTHO05D004463 5.4e-89 331.6 215 66.5
Sed0025104 Sechium edule HOM05D003780 ORTHO05D004463 7.1e-89 331.3 215 69.3
ECA246G0901 Erigeron canadensis HOM05D003780 ORTHO05D004463 1.2e-88 330.5 213 70.0
Sed0009086 Sechium edule HOM05D003780 ORTHO05D004463 2.7e-88 329.3 215 67.4
Ah.03g141600 Amaranthus hybridus HOM05D003780 ORTHO05D004463 3.5e-88 328.9 220 67.7
BraA01t00242Z Brassica rapa HOM05D003780 ORTHO05D004463 3.5e-88 328.9 240 62.5
AT4G36190 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 4.6e-88 328.6 214 66.8
Os10g0511400 Oryza sativa ssp. japonica HOM05D003780 ORTHO05D004463 7.8e-88 327.8 233 66.1
BcaC04g22932 Brassica carinata HOM05D003780 ORTHO05D004463 1.3e-87 327.0 215 64.7
C09p13760 Brassica napus HOM05D003780 ORTHO05D004463 1.3e-87 327.0 215 64.7
BolC9t54265H Brassica oleracea HOM05D003780 ORTHO05D004463 1.3e-87 327.0 215 64.7
Lj2C464T1 Lonicera japonica HOM05D003780 ORTHO05D004463 1.3e-87 327.0 184 78.3
A09p11700 Brassica napus HOM05D003780 ORTHO05D004463 1.5e-86 323.6 215 63.3
Aa31LG8G15240 Aethionema arabicum HOM05D003780 ORTHO05D004463 1.9e-86 323.2 215 66.5
Thhalv10022659m.g Eutrema salsugineum HOM05D003780 ORTHO05D004463 1.9e-86 323.2 215 63.7
FAN19G1040 Fragaria x ananassa HOM05D003780 ORTHO05D004463 1.9e-86 323.2 191 76.4
BcaB07g31688 Brassica carinata HOM05D003780 ORTHO05D004463 2.1e-85 319.7 215 63.3
CARHR108560 Cardamine hirsuta HOM05D003780 ORTHO05D004463 2.8e-85 319.3 215 62.8
BraA09t36815Z Brassica rapa HOM05D003780 ORTHO05D004463 3.6e-85 318.9 215 62.8
CANSAT01G0314 Cannabis sativa HOM05D003780 ORTHO05D004463 6.2e-85 318.2 218 67.4
Gohir.A11G177601 Gossypium hirsutum HOM05D003780 ORTHO05D004463 1.4e-84 317.0 215 66.5
Sp3g31510 Schrenkiella parvula HOM05D003780 ORTHO05D004463 1.4e-84 317.0 215 62.3
AL3G51250 Arabidopsis lyrata HOM05D003780 ORTHO05D004463 4.0e-84 315.5 215 61.4
Peaxi162Scf00010g00516 Petunia axillaris HOM05D003780 ORTHO05D004463 6.8e-84 314.7 215 71.2
SGA_v2.0_scaffold2G01250 Striga asiatica HOM05D003780 ORTHO05D004463 8.9e-84 314.3 216 68.1
AT2G18080 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 1.7e-82 310.1 215 60.5
Carub.0003s3221 Capsella rubella HOM05D003780 ORTHO05D004463 7.1e-81 304.7 215 59.1
Sabra07G0012300 Salix brachista HOM05D003780 ORTHO05D004463 6.0e-80 301.6 202 68.3
Zm00001eb220420 Zea mays HOM05D003780 ORTHO05D004463 1.0e-79 300.8 214 64.0
vmacro21907 Vaccinium macrocarpon HOM05D003780 ORTHO05D004463 1.6e-77 293.5 298 51.3
Hund16478 Selenicereus undatus HOM05D003780 ORTHO05D004463 1.4e-76 290.4 217 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4858 Anthoceros agrestis HOM05D003780 ORTHO05D004463 2.4e-76 289.7 217 59.9
arahy.Tifrunner.gnm1.ann1.5Y5RJ5 Arachis hypogaea HOM05D003780 ORTHO05D004463 9.0e-76 287.7 216 61.1
arahy.Tifrunner.gnm1.ann1.BM4PI5 Arachis hypogaea HOM05D003780 ORTHO05D004463 1.5e-75 287.0 236 58.5
Lsat_1_v5_gn_2_78501 Lactuca sativa HOM05D003780 ORTHO05D004463 2.0e-75 286.6 217 62.2
TPR.G30059 Trifolium pratense HOM05D003780 ORTHO05D004463 4.4e-75 285.4 231 61.5
Cpa.g.sc6.218 Carica papaya HOM05D003780 ORTHO05D004463 8.4e-74 281.2 217 61.8
Pp3c21_22560 Physcomitrium patens HOM05D003780 ORTHO05D004463 2.7e-72 276.2 211 60.2
SalBow8G1034 Salvia bowleyana HOM05D003780 ORTHO05D004463 1.0e-71 274.2 215 60.0
ClCG07G008330 Citrullus lanatus HOM05D003780 ORTHO05D004463 3.0e-71 272.7 215 59.5
Mapoly0040s0090 Marchantia polymorpha HOM05D003780 ORTHO05D004463 3.6e-69 265.8 213 59.2
SMO201G0083 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 3.6e-69 265.8 212 57.1
Ah.02g124630 Amaranthus hybridus HOM05D003780 ORTHO05D004463 1.5e-67 260.4 216 59.7
SMO268G0003 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 4.9e-66 255.4 212 55.2
SMO268G0007 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.1e-65 254.2 212 55.2
TPR.G30053 Trifolium pratense HOM05D003780 ORTHO05D004463 3.2e-65 252.7 221 58.8
SMO201G0038 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 7.9e-64 248.1 212 53.8
HanXRQChr14g0436841 Helianthus annuus HOM05D003780 ORTHO05D004463 4.3e-62 242.3 185 63.8
Psat6g097480 Pisum sativum HOM05D003780 ORTHO05D004469 1.7e-58 230.3 159 67.3
Lsat_1_v5_gn_3_73741 Lactuca sativa HOM05D003780 ORTHO05D004463 6.5e-58 228.4 209 54.1
Lalb_Chr09g0321911 Lupinus albus HOM05D003780 ORTHO05D004463 7.4e-54 214.9 118 74.6
AUR62043233 Chenopodium quinoa HOM05D003780 ORTHO05D004463 1.2e-51 207.6 174 58.6
BcaNung04789 Brassica carinata HOM05D003780 ORTHO05D004463 3.5e-48 196.1 156 56.4
Phvul.003G260000 Phaseolus vulgaris HOM05D003780 ORTHO05D004463 1.3e-47 194.1 131 68.7
Os10g0511600 Oryza sativa ssp. japonica HOM05D003780 ORTHO05D004463 1.2e-43 181.0 132 62.1
TPR.G36220 Trifolium pratense HOM05D003780 ORTHO05D004463 5.5e-41 172.2 131 64.9
Lj2A472G31 Lonicera japonica HOM05D003780 ORTHO05D004463 1.2e-40 171.0 95 78.9
SMO172G0049 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 5.9e-35 152.1 180 43.3
MD15G1248500 Malus domestica HOM05D003780 ORTHO05D004463 1.1e-33 147.9 96 67.7
Lalb_Chr09g0321901 Lupinus albus HOM05D003780 ORTHO05D004463 1.6e-32 144.1 100 69.0
SEGI_24629 Sequoiadendron giganteum HOM05D003780 ORTHO05D004463 1.4e-31 141.0 93 65.6
SEGI_32240 Sequoiadendron giganteum HOM05D003780 ORTHO05D004463 1.4e-31 141.0 93 65.6
SMO172G0059 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.1e-28 131.3 156 42.3
Psat7g108040 Pisum sativum HOM05D003780 ORTHO05D004463 3.8e-26 122.9 212 33.5
SMO198G0037 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 3.8e-26 122.9 158 42.4
SMO356G0195 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 2.7e-24 116.7 115 48.7
BcaNung00750 Brassica carinata HOM05D003780 ORTHO05D004463 3.6e-24 116.3 59 78.0
MD15G1248600 Malus domestica HOM05D003780 ORTHO05D004463 4.4e-22 109.4 60 70.0
SEGI_08580 Sequoiadendron giganteum HOM05D003780 ORTHO05D004463 8.2e-21 105.1 63 66.7
HanXRQChr01g0018111 Helianthus annuus HOM05D003780 ORTHO05D004463 1.0e-18 98.2 51 82.4
SMO201G0189 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 6.5e-18 95.5 120 42.5
arahy.Tifrunner.gnm1.ann1.IX4CF1 Arachis hypogaea HOM05D003780 ORTHO05D004463 3.2e-17 93.2 64 65.6
Zm00001eb043730 Zea mays HOM05D003780 ORTHO05D004463 1.4e-12 77.8 54 63.0
SMO172G0148 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.1e-09 68.2 137 32.8


User provided reference genes

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