Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 8.9e-102 373.6 192 100.0
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 3.6e-95 351.7 192 93.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 5.2e-94 347.8 191 92.1
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.3e-89 333.2 190 87.9
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.7e-89 332.8 190 87.9
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 5.1e-89 331.3 190 87.4
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.1e-75 287.0 179 78.8
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 3.3e-72 275.4 193 71.0
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 4.3e-72 275.0 148 93.2
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 1.6e-71 273.1 188 74.5
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.1e-65 251.5 189 69.8
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 8.7e-65 250.8 189 69.3
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 3.3e-64 248.8 188 66.5
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.6e-63 246.5 162 74.1
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 2.8e-63 245.7 167 70.7
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 8.2e-63 244.2 182 67.0
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.2e-61 240.4 192 65.1
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.0e-61 239.6 188 63.8
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 3.4e-61 238.8 188 63.3
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.4e-61 238.8 197 62.4
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 2.2e-60 236.1 188 64.9
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 5.0e-60 235.0 192 63.5
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.9e-59 233.0 181 62.4
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 6.1e-58 228.0 188 64.4
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 4.3e-56 221.9 197 59.9
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.3e-55 220.3 200 56.5
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 1.7e-55 219.9 180 63.3
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.2e-55 219.5 156 69.2
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 3.7e-55 218.8 187 59.9
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 4.8e-55 218.4 199 57.8
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 6.3e-55 218.0 198 56.6
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 6.3e-55 218.0 198 55.1
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 8.2e-55 217.6 196 57.1
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.4e-54 216.9 195 61.0
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.8e-54 216.5 199 56.3
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.8e-54 216.5 156 67.9
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 2.4e-54 216.1 186 60.2
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.4e-54 216.1 197 57.4
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 2.4e-54 216.1 184 59.8
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 4.1e-54 215.3 188 59.6
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 6.9e-54 214.5 199 56.3
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.2e-53 213.8 156 67.3
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.6e-53 212.6 165 65.5
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 2.6e-53 212.6 197 56.9
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.4e-53 212.2 192 55.7
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 7.7e-53 211.1 162 66.0
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 7.7e-53 211.1 195 59.5
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 7.7e-53 211.1 188 59.6
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 7.7e-53 211.1 190 56.3
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 7.7e-53 211.1 195 56.4
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 1.0e-52 210.7 155 65.2
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 1.0e-52 210.7 190 55.8
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.3e-52 210.3 156 66.0
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.9e-52 209.1 190 55.3
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.9e-52 209.1 190 55.3
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 5.0e-52 208.4 195 59.0
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 8.5e-52 207.6 165 60.6
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 8.5e-52 207.6 199 54.8
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.1e-51 207.2 200 54.5
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.4e-51 206.8 156 64.7
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.9e-51 206.5 182 58.8
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 3.2e-51 205.7 200 54.0
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 3.2e-51 205.7 210 52.9
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 4.2e-51 205.3 162 63.6
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 4.2e-51 205.3 195 55.9
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 7.2e-51 204.5 183 60.1
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.2e-50 203.8 199 54.3
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 1.6e-50 203.4 173 58.4
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 2.1e-50 203.0 160 60.6
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 6.1e-50 201.4 160 61.2
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.4e-49 200.3 193 56.5
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 3.9e-49 198.7 197 56.9
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 2.0e-48 196.4 189 56.6
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-48 195.3 187 52.9
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 4.4e-48 195.3 194 56.2
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 4.4e-48 195.3 210 51.0
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 7.4e-48 194.5 189 55.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 7.4e-48 194.5 182 54.9
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 9.7e-48 194.1 200 53.0
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.1e-46 190.7 198 52.0
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 3.1e-46 189.1 194 52.1
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 7.0e-46 188.0 179 54.7
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 1.2e-45 187.2 195 52.3
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.5e-45 186.8 174 53.4
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 2.6e-45 186.0 176 55.1
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 3.4e-45 185.7 179 54.2
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.7e-45 184.5 157 58.6
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.7e-45 184.5 157 58.6
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 7.7e-45 184.5 127 74.8
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 2.5e-43 179.5 174 53.4
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 3.2e-43 179.1 193 53.4
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 2.0e-40 169.9 178 52.2
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 9.7e-40 167.5 180 50.0
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.1e-38 164.1 122 69.7
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.3e-36 157.1 122 61.5
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.3e-36 157.1 122 63.9
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 3.2e-35 152.5 124 61.3
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 6.1e-34 148.3 124 60.5
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 7.5e-32 141.4 125 57.6
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 8.2e-31 137.9 199 41.2
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 4.5e-29 132.1 121 55.4
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.2e-27 125.9 131 48.1
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.6e-26 123.6 103 62.1
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 2.7e-26 122.9 103 57.3
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 4.7e-26 122.1 128 54.7
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 4.7e-26 122.1 156 46.2
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.5e-24 117.1 88 62.5
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 2.6e-24 116.3 108 53.7
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-23 113.2 107 53.3
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 6.3e-23 111.7 88 61.4
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.1e-22 110.9 127 43.3
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.2e-21 107.5 80 66.2
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.2e-21 107.5 108 54.6
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.0e-20 104.4 201 35.3
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 8.6e-20 101.3 172 36.0
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 8.6e-20 101.3 172 36.0
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 1.9e-19 100.1 113 44.2
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-17 94.4 94 52.1
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 4.0e-17 92.4 68 69.1
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 5.2e-17 92.0 87 54.0
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.7e-15 85.9 71 57.7
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.4e-14 84.0 66 62.1
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 5.6e-11 72.0 130 34.6
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 7.3e-11 71.6 73 46.6
SGA_v2.0_scaffold74G24592 Striga asiatica HOM05D000172 ORTHO05D008216 7.3e-11 71.6 71 52.1
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 9.5e-11 71.2 68 51.5
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 9.5e-11 71.2 57 61.4
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 2.8e-10 69.7 108 38.0
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-08 63.9 68 45.6
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.1e-06 57.8 141 31.2
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.1e-06 57.8 141 31.2


User provided reference genes

Program Settings