Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 4.7e-68 261.2 140 100.0
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 2.5e-53 212.2 141 83.7
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 1.2e-52 209.9 141 83.0
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 6.2e-52 207.6 141 82.3
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 8.4e-41 170.6 142 73.2
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 6.9e-27 124.4 140 60.7
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 2.9e-17 92.4 122 47.5
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.9e-16 89.7 139 43.9
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 2.5e-16 89.4 114 52.6
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.3e-14 83.6 139 40.3
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 3.9e-14 82.0 123 46.3
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 5.7e-13 78.2 87 48.3
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 4.8e-12 75.1 87 46.0
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.4e-11 73.6 87 46.0
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.4e-11 73.6 85 47.1
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 3.1e-11 72.4 88 46.6
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 3.1e-11 72.4 87 44.8
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 6.9e-11 71.2 122 38.5
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 9.0e-11 70.9 96 45.8
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.2e-10 70.5 96 45.8
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 1.2e-10 70.5 87 43.7
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.5e-10 70.1 92 43.5
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 2.6e-10 69.3 126 41.3
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 4.5e-10 68.6 88 45.5
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.9e-10 68.2 96 43.8
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 7.6e-10 67.8 119 37.8
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.6e-10 67.8 122 39.3
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.6e-10 67.8 122 39.3
PGSC0003DMG400030486 Solanum tuberosum HOM05D034108 ORTHO05D003507 1.0e-09 67.4 100 47.0
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 1.3e-09 67.0 87 41.4
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.3e-09 67.0 129 39.5
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.3e-09 67.0 88 45.5
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 1.7e-09 66.6 87 39.1
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.7e-09 66.6 87 42.5
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 2.2e-09 66.2 122 41.8
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 2.2e-09 66.2 91 42.9
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 2.2e-09 66.2 104 44.2
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 2.9e-09 65.9 130 34.6
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.8e-09 65.5 81 43.2
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.8e-09 65.5 87 41.4
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.8e-09 65.5 81 43.2
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.8e-09 65.5 87 41.4
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.8e-09 65.5 81 43.2
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.8e-09 65.5 87 41.4
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 5.0e-09 65.1 123 38.2
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.0e-09 65.1 113 38.1
Sopen06g033170 Solanum pennellii HOM05D034108 ORTHO05D003507 6.5e-09 64.7 100 46.0
CAN.G394.108 Capsicum annuum HOM05D034108 ORTHO05D003507 8.5e-09 64.3 74 56.8
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 8.5e-09 64.3 77 46.8
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 8.5e-09 64.3 105 38.1
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.4e-08 63.5 89 41.6
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 1.4e-08 63.5 81 43.2
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.4e-08 63.5 89 42.7
Migut.N00891 Erythranthe guttata HOM05D004233 ORTHO05D003507 1.9e-08 63.2 116 44.8
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 1.9e-08 63.2 108 38.9
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 2.5e-08 62.8 81 43.2
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 2.5e-08 62.8 117 37.6
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 3.2e-08 62.4 127 33.9
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 3.2e-08 62.4 114 39.5
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 4.2e-08 62.0 115 35.7
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 4.2e-08 62.0 88 44.3
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 4.2e-08 62.0 90 38.9
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 5.5e-08 61.6 127 37.0
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 7.2e-08 61.2 128 36.7
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 9.3e-08 60.8 90 47.8
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 1.2e-07 60.5 103 39.8
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.6e-07 60.1 114 37.7
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 2.7e-07 59.3 106 41.5
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.7e-07 59.3 116 39.7
SalBow2G0796 Salvia bowleyana HOM05D004233 ORTHO05D003507 2.7e-07 59.3 91 41.8
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 3.6e-07 58.9 126 34.1
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 3.6e-07 58.9 126 34.1
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 3.6e-07 58.9 91 44.0
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 3.6e-07 58.9 89 41.6
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 4.6e-07 58.5 131 33.6
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 4.6e-07 58.5 118 36.4
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 6.1e-07 58.2 115 34.8
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.1e-07 58.2 90 44.4
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 6.1e-07 58.2 87 41.4
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.9e-07 57.8 116 38.8
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 7.9e-07 57.8 103 35.0
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.0e-06 57.4 130 30.8
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 1.0e-06 57.4 86 38.4
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.3e-06 57.0 122 32.8
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 1.3e-06 57.0 117 35.0
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.3e-06 57.0 116 38.8
Phvul.006G065200 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 1.3e-06 57.0 90 41.1
arahy.Tifrunner.gnm1.ann1.BL7XQ3 Arachis hypogaea HOM05D004233 ORTHO05D003507 1.8e-06 56.6 84 39.3
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 1.8e-06 56.6 132 34.1
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 1.8e-06 56.6 78 39.7
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 2.3e-06 56.2 103 36.9
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.3e-06 56.2 87 41.4
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.3e-06 56.2 87 41.4
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 3.0e-06 55.8 91 41.8
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-06 55.8 87 41.4
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 3.0e-06 55.8 116 33.6
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 3.9e-06 55.5 123 29.3
CANSAT54G0898 Cannabis sativa HOM05D004233 ORTHO05D003507 3.9e-06 55.5 136 32.4
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 3.9e-06 55.5 87 36.8
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 3.9e-06 55.5 98 34.7
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 5.1e-06 55.1 80 42.5
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 5.1e-06 55.1 85 42.4
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 5.1e-06 55.1 88 38.6
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 5.1e-06 55.1 80 40.0
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 6.7e-06 54.7 87 36.8
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 6.7e-06 54.7 95 40.0
Glyma.11G176100 Glycine max HOM05D010371 ORTHO05D003507 6.7e-06 54.7 92 37.0
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 8.7e-06 54.3 124 30.6
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 8.7e-06 54.3 87 37.9
TPR.G1552 Trifolium pratense HOM05D004233 ORTHO05D003507 8.7e-06 54.3 83 39.8


User provided reference genes

Program Settings