Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G78.58 Capsicum annuum HOM05D003351 ORTHO05D003806 4.9e-102 374.4 181 100.0
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.1e-74 283.5 155 86.5
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.3e-73 280.0 144 90.3
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 4.8e-73 278.1 153 84.3
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 4.8e-73 278.1 153 84.3
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.1e-72 276.9 144 88.9
CAN.G78.57 Capsicum annuum HOM05D003351 ORTHO05D003806 2.4e-72 275.8 164 79.3
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 7.0e-72 274.2 153 83.7
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 9.1e-72 273.9 153 84.3
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 2.6e-71 272.3 153 83.7
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 1.3e-70 270.0 144 85.4
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 1.1e-69 266.9 146 82.2
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 1.4e-69 266.5 140 87.9
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 3.2e-69 265.4 146 82.2
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 7.2e-69 264.2 146 81.5
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 9.4e-69 263.8 143 84.6
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 1.6e-68 263.1 143 84.6
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 6.1e-68 261.2 140 85.7
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 1.4e-67 260.0 149 79.9
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 1.4e-67 260.0 143 83.9
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 3.9e-67 258.5 143 84.6
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 6.7e-67 257.7 143 82.5
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 2.0e-66 256.1 150 77.3
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 9.7e-66 253.8 147 80.3
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 1.3e-65 253.4 154 77.3
Oeu037305.1 Olea europaea HOM05D003351 ORTHO05D003806 1.3e-65 253.4 143 80.4
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 1.7e-65 253.1 146 78.1
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 2.8e-65 252.3 143 79.0
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 2.8e-65 252.3 143 79.0
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 3.7e-65 251.9 144 79.2
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 4.8e-65 251.5 143 79.7
Oeu037304.1 Olea europaea HOM05D003351 ORTHO05D003806 4.8e-65 251.5 142 80.3
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 1.1e-64 250.4 140 82.1
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 1.4e-64 250.0 143 79.7
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 1.4e-64 250.0 143 79.0
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 2.4e-64 249.2 143 79.7
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 2.4e-64 249.2 143 79.7
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 4.1e-64 248.4 143 77.6
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 7.0e-64 247.7 143 77.6
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 1.2e-63 246.9 149 75.8
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.6e-63 246.5 143 77.6
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 1.6e-63 246.5 140 79.3
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 1.6e-63 246.5 151 74.8
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 2.0e-63 246.1 140 79.3
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 2.0e-63 246.1 143 78.3
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 2.6e-63 245.7 143 76.2
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 4.5e-63 245.0 143 76.9
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 4.5e-63 245.0 129 86.0
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 4.5e-63 245.0 140 77.9
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 5.9e-63 244.6 140 78.6
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 5.9e-63 244.6 140 81.4
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 7.7e-63 244.2 140 78.6
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 7.7e-63 244.2 140 77.9
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 1.0e-62 243.8 140 78.6
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 1.0e-62 243.8 140 78.6
unitig_22.g6719 Utricularia gibba HOM05D003351 ORTHO05D003806 1.0e-62 243.8 145 76.6
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 1.7e-62 243.0 143 77.6
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 3.8e-62 241.9 140 75.7
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 5.0e-62 241.5 143 75.5
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 5.0e-62 241.5 148 74.3
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 6.5e-62 241.1 140 77.9
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 6.5e-62 241.1 140 78.6
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 8.5e-62 240.7 147 76.9
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 1.5e-61 240.0 140 73.6
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 2.5e-61 239.2 143 75.5
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 2.5e-61 239.2 151 72.8
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 3.2e-61 238.8 140 77.9
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 4.2e-61 238.4 140 75.0
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 7.2e-61 237.7 143 72.7
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 7.2e-61 237.7 143 72.7
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 1.2e-60 236.9 170 68.8
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.6e-60 236.5 154 72.1
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 1.6e-60 236.5 143 73.4
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 3.6e-60 235.3 143 76.2
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.6e-60 235.3 143 76.2
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.6e-60 235.3 143 76.2
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 3.6e-60 235.3 143 76.2
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 4.7e-60 235.0 140 76.4
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 6.1e-60 234.6 139 75.5
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 1.4e-59 233.4 139 76.3
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.4e-59 233.4 142 77.5
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 1.4e-59 233.4 142 77.5
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 1.8e-59 233.0 142 77.5
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 1.8e-59 233.0 143 72.7
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 1.8e-59 233.0 137 73.7
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.3e-59 232.6 129 79.1
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 2.3e-59 232.6 142 77.5
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 2.3e-59 232.6 142 73.9
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 2.3e-59 232.6 143 72.0
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 3.0e-59 232.3 153 71.2
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 4.0e-59 231.9 144 69.4
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 4.0e-59 231.9 133 78.9
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 6.7e-59 231.1 129 78.3
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 8.8e-59 230.7 143 71.3
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 8.8e-59 230.7 139 74.8
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 8.8e-59 230.7 138 75.4
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 1.2e-58 230.3 139 78.4
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 1.5e-58 229.9 140 73.6
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 2.0e-58 229.6 142 75.4
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 2.6e-58 229.2 140 72.9
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 3.3e-58 228.8 139 77.0
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 3.3e-58 228.8 150 70.0
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.7e-57 225.3 143 74.8
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 3.7e-57 225.3 139 71.2
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 4.8e-57 224.9 139 74.1
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 6.3e-57 224.6 141 73.8
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-56 223.8 140 70.0
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 1.8e-56 223.0 140 70.0
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 5.3e-56 221.5 128 75.8
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 7.0e-56 221.1 143 67.1
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 9.1e-56 220.7 143 67.1
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 1.0e-54 217.2 140 67.9
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 1.3e-54 216.9 140 67.9
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 2.2e-54 216.1 140 67.1
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 2.2e-54 216.1 140 67.1
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 8.5e-54 214.2 140 66.4
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 1.9e-53 213.0 146 63.7
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 1.9e-53 213.0 143 70.6
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 4.7e-52 208.4 141 69.5
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 1.8e-51 206.5 138 64.5
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 5.2e-51 204.9 146 64.4
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 6.8e-51 204.5 131 72.5
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 1.5e-50 203.4 142 65.5
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 3.4e-50 202.2 140 65.7
PGSC0003DMG400000200 Solanum tuberosum HOM05D003351 ORTHO05D003806 3.4e-50 202.2 169 60.9
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 2.2e-49 199.5 140 65.0
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 2.2e-49 199.5 140 65.0
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 2.8e-49 199.1 140 65.0
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 2.8e-49 199.1 140 65.0
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 2.4e-48 196.1 147 61.2
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 9.1e-48 194.1 145 60.0
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 3.5e-47 192.2 140 66.4
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 7.7e-47 191.0 142 59.2
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 7.7e-47 191.0 143 59.4
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 2.3e-46 189.5 138 64.5
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 2.3e-46 189.5 143 58.7
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 2.9e-46 189.1 134 63.4
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.1e-45 187.2 105 77.1
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 1.5e-45 186.8 143 57.3
SEGI_22600 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 2.5e-45 186.0 137 60.6
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 3.3e-45 185.7 172 52.9
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 9.5e-45 184.1 105 75.2
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 4.7e-44 181.8 154 56.5
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 4.7e-44 181.8 113 69.9
QL05p057193 Quercus lobata HOM05D003351 ORTHO05D003806 3.4e-42 175.6 139 62.6
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 5.7e-42 174.9 109 70.6
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.3e-41 173.7 106 71.7
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 2.0e-39 166.4 104 69.2
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 5.9e-39 164.9 143 53.1
CiPaw.01G060400 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.3e-38 163.7 143 55.9
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.5e-34 150.2 142 47.9
arahy.Tifrunner.gnm1.ann1.KX913X Arachis hypogaea HOM05D003351 ORTHO05D003806 2.0e-34 149.8 89 73.0
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 3.2e-32 142.5 171 48.0
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 9.2e-32 141.0 125 49.6
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 1.6e-31 140.2 89 70.8
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 1.2e-28 130.6 137 48.2
PGSC0003DMG400000037 Solanum tuberosum HOM05D003351 ORTHO05D003806 2.3e-27 126.3 72 80.6
SMO147G0196 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 4.0e-27 125.6 115 47.8
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 8.9e-27 124.4 126 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05D003351 ORTHO05D003806 1.6e-23 113.6 126 40.5
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 1.6e-23 113.6 122 43.4
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 2.1e-23 113.2 126 41.3
SHI13440 Sapria himalayana HOM05D003351 ORTHO05D003806 1.3e-22 110.5 88 59.1
Hund27283 Selenicereus undatus HOM05D003351 ORTHO05D003806 2.3e-22 109.8 85 58.8
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 5.6e-21 105.1 126 37.3
Glyma.18G232100 Glycine max HOM05D003351 ORTHO05D003806 4.0e-19 99.0 62 69.4
arahy.Tifrunner.gnm1.ann1.ZVY5TW Arachis hypogaea HOM05D003351 ORTHO05D003806 3.4e-18 95.9 60 68.3
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 6.4e-17 91.7 56 69.6
SMO273G0019 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.4e-16 90.5 147 33.3
arahy.Tifrunner.gnm1.ann1.6AK6JC Arachis hypogaea HOM05D003351 ORTHO05D003806 1.6e-15 87.0 54 74.1
PRCOL_00006030 Prasinoderma coloniale HOM05D003351 ORTHO05D003806 1.1e-13 80.9 141 31.2
PSO063G6016 Papaver somniferum HOM05D001810 ORTHO05D005662 1.3e-09 67.4 54 55.6
Glyma.18G232200 Glycine max HOM05D003351 ORTHO05D003806 1.7e-09 67.0 37 75.7
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 8.7e-06 54.7 35 62.9


User provided reference genes

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