Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 0.0e+00 1300.4 642 100.0
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 0.0e+00 1214.1 643 92.5
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1201.8 642 90.7
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1201.8 642 90.3
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 0.0e+00 1198.3 643 91.1
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 0.0e+00 1179.1 664 87.5
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 0.0e+00 1175.2 671 87.2
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 5.4e-268 927.5 644 70.0
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 1.7e-266 922.5 637 71.4
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.1e-265 919.8 636 69.5
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 7.3e-265 917.1 656 69.4
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 2.3e-263 912.1 642 68.8
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 5.9e-259 897.5 641 68.3
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.5e-257 892.9 643 68.4
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 4.0e-255 884.8 642 66.4
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.0e-254 882.5 645 67.8
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 7.5e-254 880.6 660 67.0
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 7.5e-254 880.6 660 67.0
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 3.7e-253 878.2 639 67.9
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 6.4e-253 877.5 642 67.8
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.1e-252 876.7 644 67.5
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.9e-252 875.9 640 67.5
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 7.0e-252 874.0 636 67.3
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.2e-251 873.2 641 66.5
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 2.0e-251 872.5 636 67.6
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 3.5e-251 871.7 646 66.1
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.0e-250 870.2 649 66.1
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.7e-250 869.4 640 65.6
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.3e-250 869.0 641 66.5
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 4.3e-249 864.8 637 66.1
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 4.3e-249 864.8 654 64.5
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 5.6e-249 864.4 644 64.8
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.2e-248 863.2 637 65.8
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 4.7e-248 861.3 643 65.3
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 2.3e-247 859.0 645 65.1
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 2.3e-247 859.0 643 65.2
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 5.2e-247 857.8 649 65.2
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.2e-246 856.7 640 66.4
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.3e-245 853.2 628 66.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 6.4e-245 850.9 635 66.6
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.4e-244 849.7 664 63.3
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 7.1e-244 847.4 641 65.4
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 3.5e-243 845.1 643 64.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.6e-243 844.7 675 62.1
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.0e-242 843.6 642 66.0
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.1e-241 840.1 647 65.2
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.3e-241 838.6 634 66.4
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 3.3e-241 838.6 638 64.7
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.6e-240 835.1 657 63.2
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.1e-239 833.6 642 65.0
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.4e-239 833.2 657 63.0
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 2.3e-239 832.4 642 65.0
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 2.0e-238 829.3 647 62.0
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 9.9e-238 827.0 663 62.4
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 3.7e-237 825.1 608 65.6
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 3.2e-236 822.0 646 63.3
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 4.3e-233 811.6 640 64.8
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 5.6e-233 811.2 643 63.5
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.2e-232 810.1 645 62.3
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.4e-231 806.6 648 64.4
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.0e-231 805.1 648 62.5
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 2.0e-230 802.7 638 62.5
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 2.0e-230 802.7 641 61.2
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 2.0e-230 802.7 642 61.7
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.0e-230 802.7 696 59.6
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 9.9e-230 800.4 643 62.4
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 3.8e-229 798.5 634 62.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 4.9e-229 798.1 637 62.2
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 1.2e-227 793.5 633 62.2
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 1.6e-227 793.1 630 62.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.6e-227 793.1 656 60.4
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 2.1e-227 792.7 632 61.7
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.7e-227 792.3 630 62.5
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 7.8e-227 790.8 641 62.1
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 1.3e-226 790.0 639 61.5
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 2.3e-226 789.3 644 61.2
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 7.3e-225 784.3 654 59.3
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 4.8e-224 781.6 631 62.4
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.4e-223 780.0 640 60.6
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.5e-222 776.5 642 62.3
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.5e-222 776.5 582 65.3
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.3e-221 773.5 656 60.1
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 2.2e-221 772.7 643 61.0
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.1e-217 760.4 605 63.3
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 2.7e-211 739.2 635 57.6
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 9.0e-207 724.2 633 59.1
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.2e-203 713.8 490 71.8
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 2.5e-201 706.1 532 65.2
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 5.3e-199 698.4 643 56.1
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 4.8e-192 675.2 454 71.1
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 5.9e-182 641.7 619 52.8
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 2.9e-181 639.4 620 54.2
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 1.7e-176 623.6 638 51.3
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 9.5e-156 554.7 617 48.9
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 2.8e-155 553.1 503 56.3
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 7.0e-151 538.5 427 62.5
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.3e-146 523.5 358 69.3
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 3.2e-135 486.5 330 70.9
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 9.2e-135 485.0 332 70.5
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 6.8e-130 468.8 469 52.2
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 2.1e-102 377.5 414 51.2
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 2.6e-73 280.8 266 54.9
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 2.4e-66 257.7 191 64.4
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 4.1e-66 256.9 201 63.2
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.7e-64 251.5 175 65.7
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 4.8e-51 206.8 163 60.7
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 1.2e-49 202.2 179 58.1
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 2.5e-47 194.5 118 83.1
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 9.4e-47 192.6 129 67.4
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.4e-45 188.7 121 72.7
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 8.8e-45 186.0 190 52.6
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.1e-34 152.5 185 45.4
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 4.3e-31 140.6 111 60.4
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 1.6e-30 138.7 74 82.4
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.6e-28 131.3 66 90.9
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 8.9e-21 106.3 82 61.0


User provided reference genes

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