Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 4.9e-185 651.0 325 100.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.6e-170 602.1 325 92.3
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 7.6e-170 600.5 325 92.3
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.2e-169 599.0 325 92.3
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.4e-163 579.7 325 89.2
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.6e-159 564.7 324 85.8
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.1e-155 553.5 378 75.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 5.3e-139 498.0 319 76.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.9e-138 494.6 323 75.2
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.7e-137 493.0 323 74.9
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 7.2e-136 487.6 319 74.3
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 9.4e-136 487.3 328 73.2
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.0e-134 483.8 316 75.3
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.0e-133 479.6 316 74.1
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.6e-133 479.2 321 73.5
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 3.3e-133 478.8 322 72.0
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.7e-132 476.5 317 73.5
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 9.1e-131 470.7 319 73.0
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.5e-130 468.4 321 73.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.9e-130 468.0 320 72.5
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 1.0e-129 467.2 320 72.5
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.2e-129 466.1 320 70.0
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.0e-129 464.9 320 72.5
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.5e-128 462.6 322 71.1
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.5e-128 462.6 319 73.4
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 5.5e-128 461.5 319 69.0
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 7.2e-128 461.1 317 71.6
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 9.4e-128 460.7 319 71.2
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 4.7e-127 458.4 329 69.3
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 6.1e-127 458.0 325 70.2
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 6.1e-127 458.0 319 70.5
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.0e-127 457.6 317 71.3
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.0e-126 457.2 325 70.5
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.0e-126 457.2 317 71.0
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.0e-126 457.2 319 70.5
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.0e-126 457.2 322 70.2
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.3e-126 456.1 317 71.0
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 3.0e-126 455.7 317 71.3
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.0e-126 455.3 317 71.0
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 4.0e-126 455.3 323 70.6
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 4.0e-126 455.3 325 69.2
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 6.7e-126 454.5 319 70.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 8.8e-126 454.1 316 69.9
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.1e-125 453.8 351 65.5
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.1e-125 453.8 321 69.2
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 3.3e-125 452.2 319 70.2
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 5.7e-125 451.4 319 70.2
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 7.5e-125 451.1 314 71.3
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 9.7e-125 450.7 322 68.3
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.2e-124 449.5 321 70.1
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.2e-124 449.5 317 70.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 3.7e-124 448.7 319 69.6
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.8e-124 448.4 316 68.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.1e-123 447.2 320 70.3
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.1e-123 447.2 320 70.0
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.4e-123 446.8 323 69.0
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-123 445.7 319 69.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.1e-123 445.7 316 69.0
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 7.0e-123 444.5 316 68.7
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 9.1e-123 444.1 316 70.3
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 5.0e-121 438.3 319 66.8
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 8.5e-121 437.6 318 68.9
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.5e-120 436.8 314 69.1
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.2e-120 435.6 291 74.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.2e-119 433.7 315 68.6
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.6e-119 433.3 314 66.9
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.1e-119 433.0 320 69.4
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 3.6e-119 432.2 316 66.1
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 4.7e-119 431.8 308 69.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.0e-118 430.6 316 66.5
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 3.0e-118 429.1 316 69.3
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 4.0e-118 428.7 319 65.2
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 8.8e-118 427.6 318 67.6
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.0e-117 426.4 336 65.5
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 5.7e-117 424.9 317 65.9
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 8.3e-116 421.0 319 64.9
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.8e-115 419.9 319 63.6
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.4e-115 419.5 322 68.0
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.1e-115 419.1 345 61.4
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.1e-115 418.7 316 63.6
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 5.4e-115 418.3 320 65.3
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 7.0e-115 417.9 315 64.8
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.7e-114 416.0 318 67.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 3.5e-114 415.6 318 67.3
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.5e-114 415.2 318 66.7
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 4.5e-114 415.2 317 64.0
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.7e-113 413.3 320 63.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 2.2e-113 412.9 316 64.6
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 5.0e-113 411.8 318 65.7
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.5e-112 409.5 318 63.8
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.8e-110 403.3 281 69.4
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.3e-110 402.9 330 63.3
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.0e-110 402.1 281 71.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 8.8e-110 401.0 313 63.9
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-107 392.9 261 73.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 7.7e-106 387.9 320 59.7
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.5e-104 382.9 299 63.9
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 5.7e-101 371.7 271 67.9
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 2.9e-100 369.4 245 72.7
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-97 360.9 242 74.4
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 3.6e-95 352.4 318 55.3
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.2e-93 347.4 248 69.4
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 3.4e-93 345.9 317 55.5
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-92 344.0 236 72.5
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.2e-90 337.4 203 79.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.5e-88 330.5 243 66.3
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.2e-87 327.4 234 68.8
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-85 318.9 239 67.8
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.0e-81 307.8 312 51.9
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.1e-79 300.1 234 63.7
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-75 286.6 242 64.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-74 283.5 239 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 9.6e-72 274.6 305 48.9
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 6.2e-71 271.9 192 68.8
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 3.1e-62 243.0 193 63.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.5e-56 223.4 182 61.0
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 8.4e-52 208.4 117 93.2
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 5.5e-51 205.7 131 76.3
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.1e-48 198.0 318 39.9
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 6.9e-46 188.7 321 39.3
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-37 159.1 112 67.0
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-37 159.1 112 67.0
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-37 159.1 112 67.0
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 6.5e-36 155.6 321 36.4
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 7.2e-35 152.1 108 69.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 9.3e-35 151.8 105 68.6
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.6e-34 149.4 125 53.6
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 3.7e-31 139.8 127 56.7
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.9e-28 130.2 82 74.4
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.5e-27 127.1 90 67.8
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 7.9e-26 122.1 80 73.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-23 114.8 82 70.7
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-17 95.1 77 58.4
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 8.8e-17 92.0 85 56.5
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-15 87.4 54 75.9
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 3.8e-12 76.6 57 59.6
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 6.5e-12 75.9 62 61.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 6.5e-12 75.9 62 61.3
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 2.8e-07 60.5 40 75.0


User provided reference genes

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