Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 0.0e+00 1292.7 760 100.0
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 0.0e+00 1123.2 760 82.6
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 0.0e+00 1117.1 760 82.4
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.8e-277 956.8 775 74.2
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.7e-274 948.7 766 77.7
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.3e-264 914.8 766 71.0
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 7.4e-200 701.4 802 56.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 5.9e-197 691.8 777 57.0
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 2.9e-196 689.5 797 59.0
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.5e-196 688.3 778 57.1
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.8e-193 680.2 803 55.4
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.0e-192 676.8 784 57.4
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 6.9e-190 668.3 802 53.9
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 1.7e-188 663.7 773 57.1
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 3.2e-187 659.4 785 57.2
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 2.6e-184 649.8 818 53.3
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.7e-184 647.9 797 53.8
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.8e-182 643.7 791 54.4
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 2.4e-182 643.3 795 54.1
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 5.9e-181 638.6 770 56.1
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.3e-180 637.5 781 57.1
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 6.5e-180 635.2 802 52.5
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 3.2e-179 632.9 793 58.0
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.2e-178 630.9 806 57.4
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 8.0e-178 628.2 811 51.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 8.8e-177 624.8 800 52.1
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 9.7e-176 621.3 780 58.6
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.4e-174 617.5 373 89.3
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.5e-173 612.8 794 52.3
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 7.7e-173 611.7 825 50.9
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.0e-172 611.3 800 51.6
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-170 604.4 767 57.1
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 4.4e-168 595.9 763 55.8
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 5.7e-168 595.5 773 55.9
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.8e-167 593.2 794 51.8
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 2.4e-166 590.1 796 55.9
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-165 587.8 947 45.5
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 2.0e-165 587.0 808 51.4
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.7e-165 586.6 784 51.7
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 7.7e-165 585.1 840 48.3
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.7e-164 583.9 787 52.0
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 5.0e-164 582.4 727 54.9
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 3.2e-163 579.7 798 50.0
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 4.2e-163 579.3 795 55.6
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.2e-163 579.3 785 51.2
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 7.2e-163 578.6 786 50.0
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 4.7e-162 575.9 788 54.4
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 8.0e-162 575.1 786 52.3
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.8e-161 573.9 779 55.3
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.0e-161 572.8 781 50.2
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 8.8e-161 571.6 787 49.8
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 2.0e-160 570.5 789 49.0
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 2.6e-160 570.1 784 50.4
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 3.7e-159 566.2 790 49.2
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.4e-158 562.4 787 50.6
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 9.2e-158 561.6 790 51.8
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 7.7e-157 558.5 778 49.2
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.7e-156 557.4 789 50.4
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.7e-156 557.4 792 50.3
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.3e-156 557.0 787 50.2
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.3e-156 557.0 768 55.1
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 6.6e-156 555.4 806 48.6
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 6.6e-156 555.4 790 49.9
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.8e-154 550.1 789 50.1
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 2.3e-153 547.0 783 49.2
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.0e-153 546.2 778 53.5
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 4.0e-153 546.2 786 48.5
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 5.2e-153 545.8 771 53.4
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.5e-152 544.3 788 48.9
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.6e-152 543.5 781 54.3
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.2e-151 540.4 781 48.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 3.7e-151 539.7 827 47.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 4.9e-151 539.3 804 50.1
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 2.4e-150 537.0 788 48.1
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 2.4e-150 537.0 775 47.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 2.7e-149 533.5 823 50.5
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.5e-149 533.1 805 49.9
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.0e-148 530.0 813 48.3
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 6.6e-148 528.9 785 47.0
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 5.6e-147 525.8 767 47.7
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 5.8e-144 515.8 786 52.3
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 2.2e-143 513.8 867 46.9
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.2e-141 508.1 783 47.4
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.6e-141 506.1 779 46.1
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 6.6e-140 502.3 767 46.3
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.3e-139 499.6 783 49.8
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.2e-138 498.0 788 47.8
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 6.2e-138 495.7 693 49.4
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 6.2e-138 495.7 781 46.6
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 8.1e-138 495.4 726 47.1
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 8.1e-138 495.4 786 50.8
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.0e-136 490.7 780 45.9
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 3.7e-135 486.5 834 43.9
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.2e-133 481.5 788 48.1
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.2e-133 481.5 700 53.7
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 6.0e-133 479.2 807 45.1
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.3e-132 478.0 731 51.6
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-132 477.2 737 47.2
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 3.0e-132 476.9 781 44.3
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 6.6e-132 475.7 740 47.3
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.1e-131 474.9 740 47.3
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.2e-130 471.5 737 47.2
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.6e-130 469.9 781 47.8
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 8.1e-130 468.8 477 60.0
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-129 467.2 781 45.5
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 3.1e-129 466.8 737 46.8
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 6.8e-129 465.7 693 46.8
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 3.4e-128 463.4 785 46.0
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.4e-128 463.0 780 43.5
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 3.8e-127 459.9 621 50.6
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.4e-126 458.0 606 54.5
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.9e-126 457.6 771 43.5
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.2e-125 454.9 706 45.9
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.5e-123 448.0 694 45.2
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.9e-123 447.6 703 50.5
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 7.3e-123 445.7 778 47.7
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 7.3e-123 445.7 797 44.2
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 8.1e-122 442.2 729 45.5
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-121 441.4 609 48.9
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 8.9e-121 438.7 792 45.7
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.2e-120 438.3 786 45.5
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.5e-120 438.0 658 47.1
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.5e-120 438.0 771 42.8
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 3.4e-120 436.8 609 48.4
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 9.9e-120 435.3 734 45.9
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.9e-119 433.7 803 46.8
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.1e-118 431.8 743 42.5
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 2.1e-117 427.6 482 56.2
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.1e-117 427.6 809 40.8
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-113 414.8 731 42.0
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.4e-110 404.1 731 42.0
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 5.4e-110 402.9 689 43.1
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-97 360.9 694 41.5
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 5.3e-97 359.8 380 58.2
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.9e-95 354.0 490 49.4
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.9e-91 341.3 356 58.7
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 7.4e-91 339.3 602 41.4
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.3e-82 312.0 728 35.7
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.0e-63 249.2 361 47.6
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 4.2e-62 243.8 260 58.5
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 2.6e-59 234.6 293 49.8
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.2e-56 225.7 356 45.2
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 5.0e-55 220.3 335 47.5
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.7e-53 214.5 372 44.9
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.0e-52 212.6 714 31.9
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 5.9e-48 196.8 321 40.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-44 185.7 407 38.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 9.8e-43 179.5 195 61.0
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.3e-38 164.5 145 65.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 4.1e-33 147.5 145 55.9
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 4.6e-32 144.1 175 56.6
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 4.4e-27 127.5 183 49.7
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 2.0e-24 118.6 110 64.5
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-23 115.9 162 46.3
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 6.6e-23 113.6 237 38.4
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 6.6e-23 113.6 118 52.5
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.4e-19 100.9 89 65.2
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.3e-14 84.3 88 52.3
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 7.3e-14 83.6 242 32.6
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.3e-14 83.6 514 26.7
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 7.3e-14 83.6 303 30.0
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 3.6e-13 81.3 113 44.2
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 9.9e-11 73.2 203 32.0
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.9e-10 71.6 423 27.2
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 3.2e-09 68.2 78 52.6
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 5.4e-09 67.4 155 38.1
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 7.1e-09 67.0 78 52.6
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 7.1e-09 67.0 385 25.5


User provided reference genes

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