Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 2241.8 1126 100.0
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 2158.3 1124 96.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 2157.1 1124 95.9
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2077.4 1199 89.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2074.3 1164 90.9
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 2009.6 1079 93.6
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1907.1 1127 83.8
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1885.5 1129 82.6
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1878.2 1127 82.2
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1869.4 1127 81.9
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1864.7 1130 82.4
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1858.6 1136 81.7
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1855.1 1127 81.1
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1854.3 1125 81.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1851.6 1127 81.5
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1850.9 1128 82.2
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1850.1 1133 81.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1847.4 1127 80.7
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1845.9 1125 80.7
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1845.1 1153 80.3
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1844.3 1127 80.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1840.1 1130 81.2
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1836.6 1100 82.4
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1835.8 1128 81.2
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1835.5 1128 80.6
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1835.1 1128 81.7
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1125 80.2
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1832.4 1127 80.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1831.2 1127 80.8
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1829.7 1130 81.1
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1829.3 1130 80.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1828.9 1127 80.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1824.3 1130 81.2
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1817.4 1131 79.8
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1814.3 1127 80.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1813.5 1132 79.9
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1808.9 1142 79.0
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1808.1 1130 79.6
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1805.0 1128 79.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1125 79.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1804.3 1081 82.9
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1802.7 1126 79.4
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1801.6 1129 79.8
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1801.6 1126 79.7
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1801.6 1127 79.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1801.6 1127 78.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1800.0 1127 79.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1128 79.7
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1129 79.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1796.6 1129 79.0
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1795.4 1130 78.7
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1188 76.3
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1127 78.5
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1145 78.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1784.6 1128 78.0
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1770.7 1125 78.1
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1769.6 1125 78.0
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1763.8 1127 78.3
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1763.4 1128 78.8
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1763.0 1128 77.1
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1755.7 1127 77.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1745.7 1128 78.0
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1744.2 1126 77.4
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1743.0 1188 74.3
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1735.7 1125 77.3
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1720.3 1129 76.4
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1717.2 1079 79.1
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1717.2 1325 68.7
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1696.4 1040 80.8
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1693.7 1129 75.1
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1690.6 1156 75.7
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1690.2 1128 74.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1669.1 1251 69.9
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1666.4 1127 75.1
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1663.3 1128 73.2
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1658.3 1126 73.4
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1648.3 1147 72.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1642.9 1126 72.8
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1638.2 1126 72.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1627.8 1128 72.3
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1627.5 1127 72.1
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1622.8 1127 72.8
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1622.4 1126 72.6
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1615.5 1168 71.9
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1605.9 1126 72.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1605.1 1126 72.2
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1565.4 1157 69.7
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1543.5 957 80.4
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1125 68.6
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1125 68.4
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1519.2 1126 68.1
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1517.3 1122 69.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1513.8 1166 68.1
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1455.3 1118 67.4
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1453.0 837 85.8
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1450.3 842 85.3
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1440.2 873 81.4
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1400.6 984 73.5
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1359.0 862 77.0
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1276.2 1130 60.5
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1205.3 787 76.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1199.9 823 72.4
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1170.2 678 84.7
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1122.1 1141 51.0
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.9e-308 1062.8 1521 42.9
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 4.3e-305 1051.6 1128 50.1
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 9.0e-295 1017.3 1149 48.0
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 6.3e-280 968.0 1153 45.9
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.5e-268 929.5 671 67.5
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 5.2e-266 921.8 1378 39.0
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.9e-261 906.0 585 79.3
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 8.0e-259 897.9 680 69.0
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 7.5e-257 891.3 529 84.1
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.4e-247 859.8 741 60.2
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.3e-212 742.7 454 79.7
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 2.4e-202 710.3 555 67.4
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.8e-201 705.7 434 80.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 9.0e-186 655.2 434 72.6
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 8.2e-179 632.1 593 53.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 9.1e-146 522.3 454 60.8
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.5e-137 493.8 312 77.9
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 8.3e-131 472.6 326 79.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.2e-130 469.2 380 68.7
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 6.2e-102 376.7 1098 29.3
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 9.3e-90 336.3 770 31.6
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 2.1e-86 325.1 1453 22.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.6e-81 308.9 296 55.7
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-77 295.0 234 68.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.5e-76 290.8 190 74.7
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.1e-71 276.2 194 69.6
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-67 262.7 198 72.7
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.5e-65 254.6 297 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.8e-62 245.0 319 41.1
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 7.7e-60 236.9 206 58.3
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 2.1e-57 228.8 167 65.3
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.6e-57 228.0 212 57.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.3e-54 217.2 595 32.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.7e-51 209.1 192 56.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 6.7e-48 197.2 218 55.5
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.8e-46 191.8 224 45.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.8e-45 189.1 218 52.3
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 5.0e-43 181.0 327 41.3
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.5e-39 169.5 763 24.1
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.1e-33 147.5 183 49.2
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.0e-32 146.7 87 82.8
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-30 139.8 85 80.0
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.8e-27 128.3 85 72.9
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 8.5e-27 127.1 85 68.2
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.8e-24 117.1 161 45.3
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.7e-23 114.4 139 50.4
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.8e-21 109.4 65 76.9
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.7e-20 105.5 74 70.3
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.3e-19 103.2 161 40.4
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 9.5e-18 97.1 60 76.7
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.2e-17 96.7 67 65.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 4.7e-17 94.7 95 55.8
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 4.0e-16 91.7 69 65.2
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.8e-14 85.5 80 57.5
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 3.2e-13 82.0 45 80.0
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.6e-12 79.7 56 69.6
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-11 76.3 56 62.5
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 2.3e-11 75.9 67 55.2
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 8.6e-11 73.9 49 73.5
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 8.6e-11 73.9 48 72.9
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 9.5e-10 70.5 51 66.7
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.1e-09 67.8 43 67.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.8e-08 66.2 70 50.0
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.5e-07 63.2 34 73.5
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.3e-06 60.1 41 63.4


User provided reference genes

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