Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G777.11 Capsicum annuum HOM05D000361 ORTHO05D004243 4.5e-95 351.3 181 100.0
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 1.7e-78 296.2 170 87.6
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 2.5e-77 292.4 170 86.5
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 9.1e-72 273.9 196 75.5
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 5.7e-66 254.6 157 82.8
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 4.5e-63 245.0 170 71.8
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 7.7e-63 244.2 170 71.8
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 4.7e-60 235.0 170 71.2
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 1.8e-59 233.0 144 77.8
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 5.2e-59 231.5 196 62.2
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 6.7e-59 231.1 170 68.8
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 3.3e-58 228.8 170 69.4
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 1.0e-54 217.2 170 66.5
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 6.5e-54 214.5 170 67.1
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 5.5e-53 211.5 170 62.9
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 7.2e-53 211.1 170 62.4
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 8.8e-51 204.1 170 62.4
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.2e-50 203.8 170 60.6
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 2.0e-50 203.0 170 61.2
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 3.4e-50 202.2 176 62.5
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 6.3e-49 198.0 170 61.8
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 1.1e-48 197.2 170 60.6
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 1.1e-48 197.2 167 60.5
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 4.1e-48 195.3 170 61.8
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 9.1e-48 194.1 176 59.7
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.2e-47 193.7 170 60.0
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 4.5e-47 191.8 170 59.4
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 7.7e-47 191.0 170 56.5
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 7.7e-47 191.0 170 59.4
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 1.3e-46 190.3 182 59.9
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 6.6e-46 188.0 170 60.6
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 8.6e-46 187.6 170 58.8
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 1.1e-45 187.2 157 59.9
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 1.5e-45 186.8 170 59.4
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.5e-45 186.8 170 58.8
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.5e-45 186.8 170 60.0
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 4.2e-45 185.3 170 58.2
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 4.2e-45 185.3 170 57.6
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.5e-45 184.9 170 59.4
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 5.5e-45 184.9 170 57.1
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 7.2e-45 184.5 179 55.3
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 4.7e-44 181.8 170 57.1
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.0e-43 180.6 170 55.3
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.4e-43 180.3 170 57.1
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 1.4e-43 180.3 170 56.5
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.3e-43 179.5 170 57.6
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 3.0e-43 179.1 170 57.6
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.0e-43 179.1 170 59.4
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 4.0e-43 178.7 170 57.6
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 4.0e-43 178.7 200 53.0
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 4.0e-43 178.7 157 59.2
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 8.9e-43 177.6 170 54.7
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 1.2e-42 177.2 170 52.4
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 1.2e-42 177.2 170 54.7
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 1.5e-42 176.8 170 55.9
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.0e-42 176.4 174 56.3
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 4.4e-42 175.3 170 54.7
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 1.3e-41 173.7 168 53.6
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 8.3e-41 171.0 155 58.7
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 1.4e-40 170.2 183 55.2
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 2.4e-40 169.5 170 53.5
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 3.1e-40 169.1 170 50.6
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 3.1e-40 169.1 168 53.0
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 5.4e-40 168.3 170 53.5
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 9.2e-40 167.5 168 53.0
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.2e-39 167.2 171 53.2
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 1.2e-39 167.2 171 52.6
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 1.6e-39 166.8 170 50.6
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 2.0e-39 166.4 171 51.5
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 2.7e-39 166.0 159 54.7
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 3.5e-39 165.6 170 53.5
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 4.5e-39 165.2 170 53.5
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 1.7e-38 163.3 170 53.5
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 1.7e-38 163.3 170 51.2
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 2.9e-38 162.5 142 57.0
Ca_09209_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 5.0e-38 161.8 173 51.4
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 6.6e-38 161.4 171 50.3
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 8.6e-38 161.0 152 57.2
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 8.6e-38 161.0 168 54.2
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 5.6e-37 158.3 171 50.3
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 7.3e-37 157.9 170 50.6
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 9.5e-37 157.5 171 50.9
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 9.5e-37 157.5 170 50.6
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 1.2e-36 157.1 172 52.3
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 6.1e-36 154.8 170 51.2
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 6.1e-36 154.8 171 53.2
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 1.4e-35 153.7 170 49.4
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 1.4e-35 153.7 170 49.4
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.4e-35 153.7 170 49.4
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 1.8e-35 153.3 170 47.6
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 1.8e-35 153.3 171 51.5
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 2.3e-35 152.9 170 50.0
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 3.1e-35 152.5 174 50.0
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 4.0e-35 152.1 172 49.4
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 4.0e-35 152.1 170 48.8
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 4.0e-35 152.1 171 50.3
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 5.2e-35 151.8 170 50.0
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 6.8e-35 151.4 170 48.2
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 8.9e-35 151.0 170 50.6
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 8.9e-35 151.0 170 48.2
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 1.2e-34 150.6 171 50.3
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 2.6e-34 149.4 166 51.8
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 3.4e-34 149.1 170 48.8
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 3.4e-34 149.1 171 49.1
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 4.4e-34 148.7 168 47.0
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 5.8e-34 148.3 173 49.1
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 9.8e-34 147.5 171 48.5
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 1.3e-33 147.1 167 47.3
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 1.7e-33 146.7 155 51.0
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 2.2e-33 146.4 171 47.4
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 8.3e-33 144.4 146 52.1
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 2.4e-32 142.9 171 46.2
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 7.0e-32 141.4 155 49.0
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 7.0e-32 141.4 174 44.8
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 6.0e-31 138.3 155 48.4
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 2.3e-30 136.3 171 43.9
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 5.0e-30 135.2 169 45.6
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.0e-30 135.2 128 56.2
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 5.0e-30 135.2 172 45.3
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.5e-29 132.9 169 45.0
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 3.3e-29 132.5 168 47.6
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 2.1e-28 129.8 177 44.6
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 1.1e-27 127.5 173 42.8
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 8.9e-27 124.4 140 47.1
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 3.5e-23 112.5 154 39.6
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 1.9e-21 106.7 170 40.6
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 1.9e-21 106.7 170 40.6
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 2.1e-20 103.2 169 36.1
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 3.6e-20 102.4 169 36.1
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 6.2e-20 101.7 109 51.4
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.3e-19 99.8 170 41.8
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.3e-19 99.8 170 41.8
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 2.7e-15 86.3 170 35.3
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 3.9e-14 82.4 170 35.9
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 5.1e-14 82.0 170 36.5
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 5.1e-14 82.0 82 53.7
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 8.6e-14 81.3 93 51.6
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 3.3e-13 79.3 169 30.8
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 6.2e-12 75.1 169 30.8
Hma1.2p1_0568F.1_g180240 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 6.8e-11 71.6 59 62.7
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 3.4e-10 69.3 81 48.1
DCAR_005759 Daucus carota HOM05D000361 ORTHO05D004243 4.9e-09 65.5 81 42.0
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 1.1e-08 64.3 62 46.8
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 3.2e-08 62.8 78 41.0
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 2.7e-07 59.7 58 50.0
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 6.0e-07 58.5 62 58.1
unitig_736.g22937 Utricularia gibba HOM05D000361 ORTHO05D004243 3.0e-06 56.2 48 54.2
Lsat_1_v5_gn_5_155741 Lactuca sativa HOM05D030975 ORTHO05D002209 6.6e-06 55.1 45 53.3


User provided reference genes

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