Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 1.0e-76 290.0 154 100.0
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.5e-59 233.0 168 79.8
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 8.3e-58 227.3 166 77.7
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 1.1e-57 226.9 154 81.2
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 5.4e-57 224.6 167 76.6
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.5e-54 216.5 162 74.1
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.5e-54 216.5 162 75.3
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 7.5e-43 177.6 137 68.6
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.3e-42 176.8 154 64.3
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.7e-42 176.4 125 73.6
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 4.9e-42 174.9 151 64.9
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.9e-42 174.9 157 63.1
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 1.1e-41 173.7 149 63.8
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.1e-41 173.7 119 73.9
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 4.1e-41 171.8 150 62.7
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 5.4e-41 171.4 122 72.1
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 9.2e-41 170.6 124 71.8
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.2e-40 170.2 122 72.1
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.1e-40 169.5 123 68.3
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 2.7e-40 169.1 113 74.3
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 2.7e-40 169.1 124 71.0
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.5e-40 168.7 149 62.4
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 3.5e-40 168.7 159 59.7
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 3.5e-40 168.7 147 62.6
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 6.0e-40 167.9 125 69.6
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 7.8e-40 167.5 151 63.6
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.0e-39 167.2 125 68.8
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.3e-39 166.8 136 66.9
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 1.3e-39 166.8 133 65.4
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.7e-39 166.4 151 61.6
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 2.3e-39 166.0 157 58.0
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 5.1e-39 164.9 152 60.5
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.6e-39 164.5 151 62.3
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 8.6e-39 164.1 156 59.6
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 1.1e-38 163.7 153 58.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.5e-38 163.3 153 59.5
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 4.3e-38 161.8 137 64.2
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 5.6e-38 161.4 139 61.9
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 9.5e-38 160.6 142 62.0
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.2e-37 160.2 109 72.5
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 1.2e-37 160.2 137 64.2
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.2e-37 160.2 106 74.5
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.2e-37 160.2 130 66.2
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.8e-37 159.1 138 62.3
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.8e-37 159.1 138 62.3
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 3.6e-37 158.7 138 61.6
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 3.6e-37 158.7 138 61.6
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.6e-37 158.7 169 57.4
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.6e-37 158.7 169 57.4
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 6.2e-37 157.9 155 58.7
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.8e-36 156.4 135 59.3
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.8e-36 156.4 132 63.6
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.8e-36 156.4 133 62.4
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 2.3e-36 156.0 135 64.4
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.2e-35 153.7 107 71.0
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 1.2e-35 153.7 135 57.8
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 3.4e-35 152.1 141 58.2
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 3.4e-35 152.1 139 60.4
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 5.8e-35 151.4 135 58.5
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 5.8e-35 151.4 129 61.2
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 5.8e-35 151.4 163 54.0
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-34 150.2 120 63.3
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.7e-34 149.8 135 59.3
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.7e-34 149.8 135 59.3
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.7e-34 149.8 135 59.3
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 2.9e-34 149.1 108 66.7
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 6.4e-34 147.9 103 69.9
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 8.4e-34 147.5 115 67.0
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 1.4e-33 146.7 135 57.8
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-33 146.7 135 57.8
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.4e-33 146.7 132 60.6
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.9e-33 146.4 139 56.8
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.4e-33 146.0 109 66.1
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 2.4e-33 146.0 124 60.5
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 4.1e-33 145.2 151 53.0
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 4.1e-33 145.2 173 49.7
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 5.4e-33 144.8 153 55.6
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 5.4e-33 144.8 154 50.6
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 4.6e-32 141.7 129 60.5
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 4.6e-32 141.7 97 75.3
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 6.0e-32 141.4 130 57.7
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.3e-31 140.2 109 62.4
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.9e-30 136.3 107 62.6
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 2.5e-30 136.0 108 64.8
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 7.3e-30 134.4 91 72.5
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 1.6e-29 133.3 135 57.8
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.6e-29 132.1 131 57.3
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.6e-29 132.1 131 57.3
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 4.7e-29 131.7 117 61.5
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 6.2e-29 131.3 103 68.0
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 6.2e-29 131.3 103 68.0
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 4.0e-28 128.6 91 67.0
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 4.0e-28 128.6 129 58.9
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 6.8e-28 127.9 130 55.4
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.2e-27 127.1 115 60.0
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.4e-27 125.6 113 57.5
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 5.8e-27 124.8 129 55.8
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.3e-26 123.6 97 63.9
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.3e-26 123.6 126 57.9
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 5.4e-25 118.2 122 55.7
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 2.1e-24 116.3 148 45.9
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.5e-24 115.5 146 44.5
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.3e-23 113.6 86 65.1
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.3e-23 113.6 112 58.0
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.3e-23 112.8 88 61.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 8.7e-23 110.9 101 61.4
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 8.7e-23 110.9 101 53.5
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.9e-22 109.8 145 48.3
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 2.5e-22 109.4 103 57.3
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 9.6e-22 107.5 68 73.5
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 2.8e-21 105.9 92 56.5
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.8e-20 103.2 165 39.4
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 4.0e-20 102.1 86 60.5
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.1e-17 94.0 121 47.9
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.4e-17 91.7 107 56.1
PGSC0003DMG402012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 9.3e-17 90.9 95 64.2
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 1.2e-16 90.5 88 50.0
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 3.0e-15 85.9 65 61.5
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.1e-14 84.0 80 57.5
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 9.6e-14 80.9 98 49.0
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 3.6e-13 79.0 56 66.1
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 8.1e-13 77.8 97 48.5
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 5.3e-12 75.1 68 58.8
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 5.3e-12 75.1 68 58.8
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 1.5e-11 73.6 70 55.7
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.7e-10 70.1 93 39.8
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.7e-10 70.1 93 39.8
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 2.4e-09 66.2 77 53.2
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.2e-08 63.9 46 63.0
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 1.9e-06 56.6 85 43.5
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 1.9e-06 56.6 85 43.5
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 4.3e-06 55.5 63 47.6
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 5.6e-06 55.1 46 58.7
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 5.6e-06 55.1 46 58.7
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 7.4e-06 54.7 85 42.4


User provided reference genes

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