Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.4e-288 995.7 518 100.0
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 5.0e-246 854.4 534 85.8
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.4e-240 836.3 492 88.0
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 4.6e-239 831.2 525 85.3
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 6.6e-238 827.4 525 84.4
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 3.7e-233 811.6 488 86.3
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 3.0e-230 802.0 489 85.5
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.2e-220 770.0 466 82.4
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 7.6e-218 760.8 467 82.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.1e-216 756.9 495 78.6
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.9e-216 756.1 456 82.9
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.2e-215 753.4 492 78.0
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.2e-215 753.4 492 78.0
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 7.8e-215 750.7 454 82.8
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.0e-214 750.4 460 80.4
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 3.9e-214 748.4 455 82.9
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 5.1e-214 748.0 452 82.3
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.2e-212 741.1 476 78.8
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 1.8e-211 739.6 458 81.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 3.1e-211 738.8 457 80.3
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 5.2e-211 738.0 513 73.5
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 6.9e-211 737.6 470 80.6
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 9.0e-211 737.3 469 80.0
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.0e-210 736.1 476 79.0
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 2.6e-210 735.7 443 82.8
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 3.4e-210 735.3 499 78.2
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 4.4e-210 734.9 505 74.9
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 1.7e-209 733.0 472 79.2
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 2.2e-209 732.6 438 84.2
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.9e-209 732.3 477 79.0
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 8.4e-209 730.7 456 79.2
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 5.4e-208 728.0 455 80.2
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 2.1e-207 726.1 467 77.7
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 7.8e-207 724.2 479 76.2
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.0e-206 723.8 438 82.6
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 1.0e-206 723.8 462 79.9
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 2.3e-206 722.6 467 76.9
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 5.1e-206 721.5 468 78.0
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 5.1e-206 721.5 453 80.4
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 6.6e-206 721.1 524 75.2
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 6.6e-206 721.1 475 77.3
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 6.6e-206 721.1 442 81.7
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 8.7e-206 720.7 532 70.7
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 9.6e-205 717.2 446 78.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.6e-204 716.5 501 74.9
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 1.8e-203 713.0 442 80.8
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 1.8e-203 713.0 437 79.9
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.5e-202 709.9 478 77.0
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.5e-202 708.4 488 75.6
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.7e-201 706.4 430 82.1
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 3.8e-201 705.3 434 80.2
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 4.9e-201 704.9 434 80.2
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 6.4e-201 704.5 452 79.4
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 2.4e-200 702.6 470 77.0
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 4.2e-200 701.8 459 77.6
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 5.4e-200 701.4 513 70.6
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 3.5e-199 698.7 446 76.9
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 4.6e-199 698.4 450 78.9
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 4.6e-199 698.4 487 74.5
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.3e-198 696.0 480 76.2
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.0e-198 695.7 491 71.5
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 3.0e-198 695.7 486 73.9
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.6e-196 689.9 489 73.6
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 3.7e-196 688.7 428 81.8
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.4e-195 686.8 571 64.4
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 4.0e-195 685.3 447 76.3
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 5.3e-195 684.9 480 72.9
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 6.9e-195 684.5 436 77.8
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 1.2e-194 683.7 428 79.7
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.5e-194 683.3 492 70.7
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.0e-194 682.9 440 77.3
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 2.6e-194 682.6 476 72.9
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 3.4e-194 682.2 448 76.3
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 5.8e-194 681.4 483 73.3
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 7.6e-194 681.0 488 73.4
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.7e-193 679.9 423 78.7
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.9e-193 679.1 440 76.4
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 3.8e-193 678.7 437 77.1
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 3.8e-193 678.7 437 77.1
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 8.4e-193 677.6 456 75.0
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-192 676.4 530 70.2
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.4e-192 676.0 530 70.4
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 5.5e-192 674.9 434 77.0
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 6.0e-191 671.4 448 75.9
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.0e-190 670.6 454 74.0
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 3.0e-190 669.1 436 75.5
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 3.3e-189 665.6 456 73.7
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 4.3e-189 665.2 442 76.0
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 9.6e-189 664.1 491 70.9
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 9.6e-189 664.1 506 72.3
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.1e-187 660.6 472 72.5
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.0e-186 656.4 433 75.5
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.3e-185 653.7 455 73.2
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 3.8e-185 652.1 455 73.0
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.5e-181 639.4 456 73.7
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.8e-180 636.0 488 70.3
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 5.9e-178 628.2 435 73.3
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.0e-177 627.5 450 71.3
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.7e-172 609.0 354 84.7
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 8.2e-172 607.8 426 73.0
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 5.9e-170 601.7 499 66.1
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 7.7e-170 601.3 397 77.6
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.3e-169 600.5 471 66.2
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.2e-167 594.0 467 65.1
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 1.4e-166 590.5 436 71.6
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 3.9e-166 589.0 436 71.3
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.6e-165 586.3 427 68.4
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 7.4e-165 584.7 440 69.5
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 3.7e-164 582.4 426 70.2
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.4e-163 580.5 487 64.7
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.1e-163 578.9 412 71.1
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 5.3e-163 578.6 395 73.9
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 7.2e-160 568.2 353 80.2
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.2e-159 567.4 364 77.2
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.6e-157 559.7 414 70.0
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 5.7e-157 558.5 414 69.8
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.8e-150 537.0 435 62.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 3.0e-150 536.2 449 61.9
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 4.0e-150 535.8 487 59.5
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 4.1e-147 525.8 418 63.6
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 9.4e-144 514.6 422 64.9
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.5e-138 495.7 442 59.3
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.3e-132 477.6 380 65.0
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 2.7e-130 469.9 453 54.1
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 2.7e-130 469.9 508 51.6
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.0e-129 468.0 362 68.8
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.7e-129 467.2 380 61.8
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 5.6e-128 462.2 357 68.3
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 3.6e-127 459.5 378 64.6
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 2.9e-124 449.9 435 54.0
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.4e-123 447.6 365 64.9
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 4.3e-120 436.0 469 50.5
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.2e-119 434.5 424 56.6
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 8.0e-119 431.8 636 42.5
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 2.0e-117 427.2 437 56.5
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 8.3e-116 421.8 417 57.6
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.3e-113 414.5 418 52.4
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.1e-104 384.8 347 57.9
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 1.2e-101 374.8 458 49.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 9.9e-101 371.7 310 63.9
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 3.8e-100 369.8 284 68.0
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.4e-99 367.9 492 44.7
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 9.2e-99 365.2 275 72.0
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 2.1e-95 354.0 487 43.9
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 9.9e-93 345.1 321 56.7
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.7e-90 337.0 447 45.4
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.4e-83 314.7 377 44.0
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 5.8e-77 292.7 337 47.8
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 4.9e-76 289.7 196 71.9
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.8e-70 271.2 167 76.6
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 3.1e-70 270.4 359 47.4
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 8.4e-68 262.3 166 77.7
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.6e-53 214.2 293 47.8
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 2.6e-40 171.0 98 82.7
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 3.1e-30 137.5 105 63.8
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 8.5e-28 129.4 193 43.0
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 8.5e-28 129.4 147 55.1
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 7.2e-27 126.3 106 62.3
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 8.0e-26 122.9 93 73.1
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 9.1e-22 109.4 149 44.3
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 5.9e-21 106.7 135 48.1
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 1.7e-20 105.1 122 45.9
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 2.9e-20 104.4 163 42.9
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 6.6e-20 103.2 156 46.2
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-18 98.6 70 62.9
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 4.7e-18 97.1 135 45.9
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 2.3e-17 94.7 45 91.1
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 4.4e-16 90.5 178 33.7
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 7.5e-16 89.7 76 57.9
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.1e-14 85.9 46 87.0
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 4.6e-13 80.5 75 50.7
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 1.9e-11 75.1 101 44.6
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 2.1e-10 71.6 96 41.7
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 6.2e-10 70.1 152 32.9
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 8.9e-09 66.2 99 40.4
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.2e-08 65.9 62 50.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.0e-08 65.1 199 25.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-07 62.4 211 28.0
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 4.9e-07 60.5 29 93.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.9e-07 60.5 202 23.8
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 4.1e-06 57.4 202 23.3


User provided reference genes

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