Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G774.16 Capsicum annuum HOM05D012638 ORTHO05D002272 1.1e-77 293.5 172 100.0
CAN.G774.15 Capsicum annuum HOM05D012638 ORTHO05D002272 2.1e-62 242.7 172 79.1
PGSC0003DMG401012214 Solanum tuberosum HOM05D012638 ORTHO05D002272 1.3e-59 233.4 172 74.4
CAN.G774.17 Capsicum annuum HOM05D012638 ORTHO05D002272 1.1e-55 220.3 172 76.2
Sopen08g029290 Solanum pennellii HOM05D012638 ORTHO05D002272 1.1e-42 177.2 148 68.9
Nitab4.5_0003441g0060 Nicotiana tabacum HOM05D012638 ORTHO05D002272 7.1e-42 174.5 148 60.8
Nitab4.5_0000580g0290 Nicotiana tabacum HOM05D012638 ORTHO05D002272 2.3e-40 169.5 112 75.9
CAN.G474.14 Capsicum annuum HOM05D012638 ORTHO05D002272 7.6e-36 154.5 170 59.4
Oeu009176.1 Olea europaea HOM05D012638 ORTHO05D002272 5.5e-26 121.7 165 42.4
Dinv37647 Davidia involucrata HOM05D002972 ORTHO05D002272 1.1e-23 114.0 107 52.3
SalBow1G2737 Salvia bowleyana HOM05D012638 ORTHO05D002272 1.1e-23 114.0 167 40.7
COL.COLO4_17698 Corchorus olitorius HOM05D002972 ORTHO05D002272 6.1e-17 91.7 98 45.9
Migut.E01098 Erythranthe guttata HOM05D012638 ORTHO05D002272 6.1e-17 91.7 168 46.4
SGA_v2.0_scaffold144G35949 Striga asiatica HOM05D012638 ORTHO05D002272 1.1e-15 87.4 158 40.5
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 4.5e-12 75.5 108 31.5
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 1.0e-11 74.3 108 34.3
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 1.0e-11 74.3 100 37.0
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 1.3e-11 73.9 100 37.0
QL07p013092 Quercus lobata HOM05D030119 ORTHO05D002272 1.3e-11 73.9 110 39.1
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 1.7e-11 73.6 153 30.7
Psat6g232000 Pisum sativum HOM05D002972 ORTHO05D002272 3.8e-11 72.4 115 33.9
Gohir.A12G036900 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.1e-10 70.9 107 32.7
Peaxi162Scf00119g00710 Petunia axillaris HOM05D009759 ORTHO05D011206 1.9e-10 70.1 84 45.2
Gohir.D12G035500 Gossypium hirsutum HOM05D002972 ORTHO05D002272 2.5e-10 69.7 99 34.3
Gorai.008G036800 Gossypium raimondii HOM05D002972 ORTHO05D002272 2.5e-10 69.7 99 34.3
Lalb_Chr21g0306941 Lupinus albus HOM05D002972 ORTHO05D002272 2.5e-10 69.7 116 35.3
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 3.2e-10 69.3 108 32.4
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 3.2e-10 69.3 86 38.4
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.2e-09 67.4 108 33.3
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 1.6e-09 67.0 116 32.8
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.6e-09 67.0 108 29.6
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.6e-09 67.0 108 29.6
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 1.6e-09 67.0 108 29.6
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 1.6e-09 67.0 110 31.8
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 2.1e-09 66.6 108 31.5
HanXRQChr03g0080231 Helianthus annuus HOM05D000555 ORTHO05D000646 2.1e-09 66.6 92 33.7
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 2.1e-09 66.6 100 34.0
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 2.7e-09 66.2 108 31.5
arahy.Tifrunner.gnm1.ann1.8AQR6P Arachis hypogaea HOM05D002972 ORTHO05D002272 4.7e-09 65.5 116 33.6
Manes.04G072100 Manihot esculenta HOM05D002972 ORTHO05D002272 4.7e-09 65.5 108 31.5
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 4.7e-09 65.5 100 33.0
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 6.1e-09 65.1 108 29.6
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 6.1e-09 65.1 110 30.0
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 6.1e-09 65.1 100 33.0
QL07p012989 Quercus lobata HOM05D030119 ORTHO05D002272 8.0e-09 64.7 89 37.1
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 1.0e-08 64.3 108 30.6
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 1.0e-08 64.3 108 34.3
Glyma.10G281600 Glycine max HOM05D002972 ORTHO05D002272 1.0e-08 64.3 108 32.4
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 1.0e-08 64.3 111 32.4
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 1.0e-08 64.3 100 32.0
Atru.chr5.3374 Acer truncatum HOM05D002972 ORTHO05D002272 1.4e-08 63.9 107 30.8
arahy.Tifrunner.gnm1.ann1.DENV23 Arachis hypogaea HOM05D002972 ORTHO05D002272 1.4e-08 63.9 116 32.8
CiPaw.05G083100 Carya illinoinensis HOM05D002972 ORTHO05D002272 1.4e-08 63.9 108 29.6
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 1.4e-08 63.9 109 36.7
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 1.4e-08 63.9 102 35.3
TWI79G0168 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 1.4e-08 63.9 99 35.4
Carub.0007s0520 Capsella rubella HOM05D002972 ORTHO05D002272 1.8e-08 63.5 95 35.8
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 1.8e-08 63.5 93 38.7
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 1.8e-08 63.5 116 29.3
THA.LOC104807376 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 1.8e-08 63.5 109 31.2
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.3e-08 63.2 94 34.0
QL07p013083 Quercus lobata HOM05D030119 ORTHO05D002272 2.3e-08 63.2 89 34.8
MD10G1125400 Malus domestica HOM05D002972 ORTHO05D002272 3.0e-08 62.8 108 30.6
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 3.0e-08 62.8 115 31.3
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 3.0e-08 62.8 115 31.3
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 3.0e-08 62.8 110 32.7
Lalb_Chr02g0143421 Lupinus albus HOM05D002972 ORTHO05D002272 3.9e-08 62.4 109 33.9
AL7G16110 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 5.2e-08 62.0 95 34.7
AT4G35110 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 5.2e-08 62.0 95 33.7
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 5.2e-08 62.0 88 39.8
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 5.2e-08 62.0 101 31.7
Sp7g32880 Schrenkiella parvula HOM05D002972 ORTHO05D002272 5.2e-08 62.0 107 37.4
VMungo1309G1142 Vigna mungo HOM05D002972 ORTHO05D002272 5.2e-08 62.0 107 29.9
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 6.7e-08 61.6 89 32.6
BcaB08g34951 Brassica carinata HOM05D002972 ORTHO05D002272 8.8e-08 61.2 98 33.7
A08p16350 Brassica napus HOM05D002972 ORTHO05D002272 8.8e-08 61.2 93 33.3
C03p85160 Brassica napus HOM05D002972 ORTHO05D002272 8.8e-08 61.2 104 34.6
BraA08t33603Z Brassica rapa HOM05D002972 ORTHO05D002272 8.8e-08 61.2 80 37.5
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 8.8e-08 61.2 112 32.1
Lj1g0000965 Lotus japonicus HOM05D002972 ORTHO05D002272 8.8e-08 61.2 108 29.6
BcaC01g00847 Brassica carinata HOM05D002972 ORTHO05D002272 1.1e-07 60.8 103 35.0
BolC3t20805H Brassica oleracea HOM05D002972 ORTHO05D002272 1.1e-07 60.8 103 35.0
CARHR243390 Cardamine hirsuta HOM05D002972 ORTHO05D002272 1.1e-07 60.8 95 33.7
Thhalv10025438m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 1.1e-07 60.8 107 37.4
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 1.1e-07 60.8 118 29.7
TAR633G1264 Trochodendron aralioides HOM05D002972 ORTHO05D002272 1.1e-07 60.8 105 32.4
BcaC01g02973 Brassica carinata HOM05D002972 ORTHO05D002272 1.5e-07 60.5 84 34.5
BcaC06g36191 Brassica carinata HOM05D002972 ORTHO05D002272 1.5e-07 60.5 108 31.5
C07p06710 Brassica napus HOM05D002972 ORTHO05D002272 1.5e-07 60.5 108 31.5
BolC3t18035H Brassica oleracea HOM05D002972 ORTHO05D002272 1.5e-07 60.5 84 34.5
BolC7t41094H Brassica oleracea HOM05D002972 ORTHO05D002272 1.5e-07 60.5 108 31.5
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 1.5e-07 60.5 108 31.5
Glyma.06G003100 Glycine max HOM05D002972 ORTHO05D002272 1.5e-07 60.5 109 29.4
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 1.5e-07 60.5 100 32.0
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 1.5e-07 60.5 99 33.3
Sp6g32370 Schrenkiella parvula HOM05D002972 ORTHO05D002272 1.5e-07 60.5 99 35.4
A07p04220 Brassica napus HOM05D002972 ORTHO05D002272 2.0e-07 60.1 108 30.6
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 2.0e-07 60.1 110 31.8
Phvul.009G118800 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 2.0e-07 60.1 106 28.3
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 2.0e-07 60.1 166 24.1
VMungo0720G1914 Vigna mungo HOM05D002972 ORTHO05D002272 2.0e-07 60.1 100 31.0
Glyma.20G107600 Glycine max HOM05D002972 ORTHO05D002272 2.6e-07 59.7 108 32.4
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 2.6e-07 59.7 110 31.8
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 2.6e-07 59.7 110 30.0
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 2.6e-07 59.7 99 31.3
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 3.3e-07 59.3 104 34.6
BcaB03g16425 Brassica carinata HOM05D002972 ORTHO05D002272 3.3e-07 59.3 108 30.6
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 3.3e-07 59.3 98 35.7
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 3.3e-07 59.3 110 30.9
Medtr1g112660 Medicago truncatula HOM05D002972 ORTHO05D002272 3.3e-07 59.3 118 31.4
TPR.G38492 Trifolium pratense HOM05D002972 ORTHO05D002272 3.3e-07 59.3 99 33.3
BcaC01g00236 Brassica carinata HOM05D002972 ORTHO05D002272 4.4e-07 58.9 88 36.4
C03p57600 Brassica napus HOM05D002972 ORTHO05D002272 4.4e-07 58.9 84 33.3
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 4.4e-07 58.9 112 30.4
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 4.4e-07 58.9 112 31.2
Thhalv10022729m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 4.4e-07 58.9 111 34.2
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 4.4e-07 58.9 90 35.6
C01p03750 Brassica napus HOM05D002972 ORTHO05D002272 5.7e-07 58.5 106 35.8
BolC1t00367H Brassica oleracea HOM05D002972 ORTHO05D002272 5.7e-07 58.5 106 35.8
BolC8t51753H Brassica oleracea HOM05D002972 ORTHO05D002272 5.7e-07 58.5 100 31.0
Ca_15296_v3 Cicer arietinum L. HOM05D002972 ORTHO05D002272 5.7e-07 58.5 108 36.1
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 5.7e-07 58.5 99 28.3
Lj5g0016622 Lotus japonicus HOM05D002972 ORTHO05D002272 5.7e-07 58.5 109 33.0
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 5.7e-07 58.5 108 30.6
TPR.G10 Trifolium pratense HOM05D002972 ORTHO05D002272 5.7e-07 58.5 108 26.9
BcaC07g41183 Brassica carinata HOM05D002972 ORTHO05D002272 7.4e-07 58.2 99 31.3
BcaNung00626 Brassica carinata HOM05D002972 ORTHO05D002272 7.4e-07 58.2 106 35.8
A09p58610 Brassica napus HOM05D002972 ORTHO05D002272 7.4e-07 58.2 99 31.3
C08p41900 Brassica napus HOM05D002972 ORTHO05D002272 7.4e-07 58.2 99 31.3
BraA09t41248Z Brassica rapa HOM05D002972 ORTHO05D002272 7.4e-07 58.2 99 31.3
Carub.0006s2749 Capsella rubella HOM05D002972 ORTHO05D002272 7.4e-07 58.2 90 31.1
ECA247G3063 Erigeron canadensis HOM05D000555 ORTHO05D000646 7.4e-07 58.2 99 32.3
MD05G1122800 Malus domestica HOM05D002972 ORTHO05D002272 7.4e-07 58.2 108 25.9
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 7.4e-07 58.2 99 29.3
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 7.4e-07 58.2 158 25.3
BraA03t13740Z Brassica rapa HOM05D002972 ORTHO05D002272 9.7e-07 57.8 84 33.3
Medtr3g118020 Medicago truncatula HOM05D002972 ORTHO05D002272 9.7e-07 57.8 108 32.4
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 9.7e-07 57.8 105 28.6
AL3G49660 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 1.3e-06 57.4 84 32.1
AT2G16900 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 1.3e-06 57.4 84 32.1
A08p24180 Brassica napus HOM05D002972 ORTHO05D002272 1.3e-06 57.4 99 31.3
BraA08t34372Z Brassica rapa HOM05D002972 ORTHO05D002272 1.3e-06 57.4 99 31.3
Lalb_Chr08g0246731 Lupinus albus HOM05D002972 ORTHO05D002272 1.3e-06 57.4 101 28.7
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 1.3e-06 57.4 99 34.3
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 1.3e-06 57.4 79 38.0
Sed0018187 Sechium edule HOM05D002972 ORTHO05D002272 1.3e-06 57.4 114 31.6
AL7G10440 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 1.7e-06 57.0 86 33.7
AT2G20950 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 1.7e-06 57.0 86 33.7
AT4G38550 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 1.7e-06 57.0 86 33.7
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 1.7e-06 57.0 84 32.1
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 1.7e-06 57.0 112 29.5
Thhalv10016060m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 1.7e-06 57.0 111 33.3
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 1.7e-06 57.0 77 35.1
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 1.7e-06 57.0 99 28.3
AT5G11140 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 2.2e-06 56.6 111 34.2
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 2.2e-06 56.6 99 28.3
A01p03430 Brassica napus HOM05D002972 ORTHO05D002272 2.2e-06 56.6 74 36.5
BraA01t00330Z Brassica rapa HOM05D002972 ORTHO05D002272 2.2e-06 56.6 74 36.5
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 2.2e-06 56.6 103 31.1
Migut.L00029 Erythranthe guttata HOM05D002972 ORTHO05D002272 2.2e-06 56.6 94 34.0
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 2.2e-06 56.6 103 31.1
BcaB08g37086 Brassica carinata HOM05D002972 ORTHO05D002272 2.8e-06 56.2 98 34.7
BcaC01g00235 Brassica carinata HOM05D002972 ORTHO05D002272 2.8e-06 56.2 107 29.9
BraA10t44714Z Brassica rapa HOM05D000191 ORTHO05D002272 2.8e-06 56.2 99 33.3
Carub.0003s3071 Capsella rubella HOM05D002972 ORTHO05D002272 2.8e-06 56.2 82 36.6
Psat5g002240 Pisum sativum HOM05D002972 ORTHO05D002272 2.8e-06 56.2 108 31.5
A03p27420 Brassica napus HOM05D002972 ORTHO05D002272 3.7e-06 55.8 88 31.8
Glyma.04G003100 Glycine max HOM05D002972 ORTHO05D002272 3.7e-06 55.8 109 28.4
Aa31LG2G15380 Aethionema arabicum HOM05D002972 ORTHO05D002272 4.8e-06 55.5 92 34.8
Aa31LG3G16020 Aethionema arabicum HOM05D002972 ORTHO05D002272 4.8e-06 55.5 111 32.4
Aa31LG8G14090 Aethionema arabicum HOM05D002972 ORTHO05D002272 4.8e-06 55.5 87 34.5
A10p26570 Brassica napus HOM05D000191 ORTHO05D002272 4.8e-06 55.5 99 33.3
C04p55680 Brassica napus HOM05D002972 ORTHO05D002272 4.8e-06 55.5 99 31.3
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 4.8e-06 55.5 110 30.9
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 4.8e-06 55.5 99 31.3
ECA247G2469 Erigeron canadensis HOM05D000555 ORTHO05D000646 4.8e-06 55.5 107 29.9
HanXRQChr04g0099571 Helianthus annuus HOM05D010915 ORTHO05D002272 4.8e-06 55.5 91 38.5
Aa31LG6G16600 Aethionema arabicum HOM05D002972 ORTHO05D002272 6.3e-06 55.1 115 29.6
BcaB08g34675 Brassica carinata HOM05D002972 ORTHO05D002272 6.3e-06 55.1 79 36.7
BraA03t11954Z Brassica rapa HOM05D002972 ORTHO05D002272 6.3e-06 55.1 101 28.7
AL7G10450 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 8.2e-06 54.7 87 36.8
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 8.2e-06 54.7 99 29.3
BolC3t19966H Brassica oleracea HOM05D002972 ORTHO05D002272 8.2e-06 54.7 107 28.0
CARHR107190 Cardamine hirsuta HOM05D002972 ORTHO05D002272 8.2e-06 54.7 108 27.8
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 8.2e-06 54.7 100 34.0
Thhalv10000105m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 8.2e-06 54.7 104 28.8
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 8.2e-06 54.7 93 32.3


User provided reference genes

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