Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.7e-100 368.6 180 100.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 7.6e-95 350.5 180 95.6
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 2.2e-94 349.0 180 95.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 2.2e-94 349.0 180 95.0
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.2e-94 349.0 180 95.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.3e-91 339.7 180 88.3
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 3.3e-90 335.1 180 86.1
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 87.2
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 87.2
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.3e-89 333.2 179 86.0
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 87.8
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 86.1
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 86.7
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 87.2
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.1
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.1
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 86.7
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 85.0
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 84.4
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 87.8
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.1
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.0
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 86.1
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 86.1
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 83.3
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 85.0
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 85.0
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 1.5e-87 326.2 180 83.9
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 1.5e-87 326.2 180 83.9
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 84.4
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 85.0
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 83.9
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 2.6e-87 325.5 180 83.9
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 83.9
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 83.9
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 82.8
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 84.4
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 83.3
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 82.8
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 83.3
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 82.8
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 82.2
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.9
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 81.7
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 84.4
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 3.8e-86 321.6 178 83.7
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.2
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 81.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 82.2
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 81.7
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 82.2
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 82.2
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 82.2
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 81.1
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.2
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 4.2e-85 318.2 179 83.8
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 83.3
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 1.2e-84 316.6 181 82.9
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 80.6
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 80.6
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 6.0e-84 314.3 199 77.4
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 6.0e-84 314.3 178 80.9
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.3e-83 313.2 159 95.6
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 81.7
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.7e-83 310.5 165 87.3
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.9e-82 309.3 187 78.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 2.5e-82 308.9 181 80.1
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 2.5e-82 308.9 180 79.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 4.3e-82 308.1 206 73.8
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 5.6e-82 307.8 178 79.8
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 2.1e-81 305.8 178 79.8
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 4.8e-81 304.7 203 72.9
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.5e-79 299.7 180 82.8
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 2.6e-79 298.9 160 88.8
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 3.8e-78 295.0 159 89.3
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 8.4e-78 293.9 180 77.8
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.1e-76 289.3 175 76.6
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 3.5e-76 288.5 174 76.4
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.0e-75 287.0 161 81.4
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 6.7e-75 284.3 160 84.4
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 6.7e-75 284.3 156 84.6
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 4.8e-73 278.1 178 73.6
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.4e-72 275.8 162 79.0
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.5e-71 273.1 160 77.5
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.0e-71 272.7 167 76.6
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 2.6e-71 272.3 172 78.5
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 4.5e-71 271.6 177 70.1
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 7.6e-71 270.8 164 78.7
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 5.0e-70 268.1 175 67.4
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.6e-68 263.1 181 75.7
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.3e-67 260.0 153 79.7
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 1.1e-66 256.9 218 62.4
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 7.4e-66 254.2 175 64.0
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 8.2e-65 250.8 175 64.0
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.8e-64 249.6 139 82.0
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.8e-64 249.6 139 79.9
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 5.7e-58 228.0 171 59.1
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.0e-54 217.2 114 84.2
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.0e-51 207.2 174 52.9
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 8.8e-51 204.1 121 76.9
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.6e-50 202.6 117 75.2
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 2.5e-45 186.0 130 64.6
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.6e-44 183.3 185 54.6
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.6e-44 183.3 185 54.6
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.2e-39 167.2 93 78.5
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 2.0e-39 166.4 174 44.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.8e-38 162.2 99 75.8
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 6.5e-38 161.4 113 73.5
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.1e-36 156.4 176 44.9
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 2.3e-35 152.9 116 62.1
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 5.2e-35 151.8 91 74.7
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 8.8e-35 151.0 177 49.2
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 9.5e-29 131.0 80 72.5
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 2.0e-23 113.2 99 57.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.3e-22 109.8 71 64.8
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.9e-22 109.4 65 80.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 4.7e-20 102.1 100 57.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 1.4e-19 100.5 56 89.3
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 3.4e-18 95.9 56 80.4
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.9e-17 92.8 51 82.4
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 7.0e-16 88.2 46 87.0
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 4.6e-07 58.9 57 52.6
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.3e-06 56.6 38 68.4


User provided reference genes

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