Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G771.8 Capsicum annuum HOM05D002989 ORTHO05D003218 1.8e-81 305.8 149 100.0
Nitab4.5_0001044g0020 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.3e-36 156.0 92 80.4
Nitab4.5_0013316g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 5.6e-35 151.4 92 81.5
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 7.3e-35 151.0 87 81.6
Solyc06g084110.1 Solanum lycopersicum HOM05D002989 ORTHO05D003218 4.0e-25 118.6 64 81.2
PGSC0003DMG402020059 Solanum tuberosum HOM05D002989 ORTHO05D003218 6.4e-23 111.3 60 81.7
Peaxi162Scf00288g01310 Petunia axillaris HOM05D002989 ORTHO05D003218 1.2e-21 107.1 66 77.3
CSS0037436 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.4e-17 92.8 79 54.4
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 4.5e-16 88.6 83 51.8
SGA_v2.0_scaffold1G00529 Striga asiatica HOM05D002989 ORTHO05D003218 7.6e-16 87.8 90 50.0
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 9.9e-16 87.4 70 62.9
Rhsim13G0028600 Rhododendron simsii HOM05D002989 ORTHO05D003218 6.4e-15 84.7 81 55.6
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 1.9e-14 83.2 86 52.3
vmacro02611 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 7.1e-14 81.3 75 54.7
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 9.3e-14 80.9 90 47.8
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 2.7e-13 79.3 86 51.2
MSTRG.21529 Avicennia marina HOM05D002989 ORTHO05D003218 7.9e-13 77.8 88 48.9
Oeu052360.1 Olea europaea HOM05D002989 ORTHO05D003218 1.8e-12 76.6 92 47.8
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.8e-12 76.6 87 49.4
Atru.chr5.1516 Acer truncatum HOM05D002989 ORTHO05D003218 2.3e-12 76.3 87 47.1
Migut.D00361 Erythranthe guttata HOM05D002989 ORTHO05D003218 8.7e-12 74.3 95 47.4
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 1.9e-11 73.2 86 47.7
Lj2C1165T16 Lonicera japonica HOM05D002989 ORTHO05D003218 2.5e-11 72.8 99 43.4
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 5.6e-11 71.6 64 53.1
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 7.4e-11 71.2 88 45.5
SalBow4G0873 Salvia bowleyana HOM05D002989 ORTHO05D003218 7.4e-11 71.2 76 50.0
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 7.4e-11 71.2 59 57.6
Potri.005G214500 Populus trichocarpa HOM05D002989 ORTHO05D003218 2.8e-10 69.3 82 47.6
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 4.8e-10 68.6 84 42.9
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 4.8e-10 68.6 62 51.6
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 6.2e-10 68.2 88 45.5
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 6.2e-10 68.2 79 44.3
Lsat_1_v5_gn_5_185781 Lactuca sativa HOM05D002989 ORTHO05D003218 8.1e-10 67.8 78 46.2
Sc17g0001190 Simmondsia chinensis HOM05D002989 ORTHO05D003218 8.1e-10 67.8 63 49.2
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 1.1e-09 67.4 80 42.5
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 1.4e-09 67.0 81 42.0
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 1.8e-09 66.6 76 40.8
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 1.8e-09 66.6 81 43.2
Actinidia21825 Actinidia chinensis HOM05D002989 ORTHO05D003218 2.4e-09 66.2 83 45.8
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.4e-09 66.2 64 48.4
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 2.4e-09 66.2 84 45.2
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 3.1e-09 65.9 64 48.4
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 3.1e-09 65.9 60 45.0
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 4.0e-09 65.5 82 39.0
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 4.0e-09 65.5 82 39.0
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 4.0e-09 65.5 82 39.0
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 4.0e-09 65.5 82 39.0
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 4.0e-09 65.5 82 39.0
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 4.0e-09 65.5 81 40.7
Sabra05G0163900 Salix brachista HOM05D002989 ORTHO05D003218 5.3e-09 65.1 94 37.2
DCAR_012506 Daucus carota HOM05D002989 ORTHO05D003218 6.9e-09 64.7 66 47.0
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 6.9e-09 64.7 90 42.2
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 9.0e-09 64.3 81 38.3
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 1.2e-08 63.9 64 51.6
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.2e-08 63.9 87 35.6
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 1.5e-08 63.5 84 46.4
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 2.0e-08 63.2 84 36.9
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 2.0e-08 63.2 87 37.9
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 2.0e-08 63.2 78 41.0
QL12p042129 Quercus lobata HOM05D000097 ORTHO05D003218 2.0e-08 63.2 67 46.3
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.0e-08 63.2 99 37.4
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 3.4e-08 62.4 86 40.7
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 3.4e-08 62.4 84 41.7
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 4.5e-08 62.0 64 45.3
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 4.5e-08 62.0 88 43.2
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 4.5e-08 62.0 88 43.2
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 5.8e-08 61.6 83 44.6
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 5.8e-08 61.6 88 43.2
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 7.6e-08 61.2 65 47.7
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 9.9e-08 60.8 65 46.2
TWI60G0894 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 9.9e-08 60.8 91 37.4
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 1.3e-07 60.5 62 45.2
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 1.3e-07 60.5 72 38.9
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.3e-07 60.5 88 39.8
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 1.3e-07 60.5 92 38.0
PGSC0003DMG401019311 Solanum tuberosum HOM05D002989 ORTHO05D003218 1.3e-07 60.5 88 40.9
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 1.7e-07 60.1 77 39.0
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.7e-07 60.1 79 40.5
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.7e-07 60.1 62 50.0
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 2.2e-07 59.7 79 40.5
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 2.9e-07 59.3 88 42.0
Rhsim01G0068400 Rhododendron simsii HOM05D002989 ORTHO05D003218 2.9e-07 59.3 99 30.3
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 3.8e-07 58.9 93 36.6
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.8e-07 58.9 91 37.4
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.8e-07 58.9 91 37.4
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 3.8e-07 58.9 101 35.6
AUR62032286 Chenopodium quinoa HOM05D002989 ORTHO05D003218 6.4e-07 58.2 83 42.2
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 6.4e-07 58.2 63 46.0
HanXRQChr09g0240651 Helianthus annuus HOM05D002989 ORTHO05D003218 6.4e-07 58.2 84 38.1
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 6.4e-07 58.2 88 39.8
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 6.4e-07 58.2 93 35.5
TWI60G1134 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 6.4e-07 58.2 61 52.5
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 8.4e-07 57.8 91 37.4
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.1e-06 57.4 84 40.5
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 1.1e-06 57.4 63 44.4
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 1.1e-06 57.4 68 42.6
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 1.4e-06 57.0 87 33.3
unitig_0.g137 Utricularia gibba HOM05D002989 ORTHO05D003218 1.4e-06 57.0 87 36.8
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 1.9e-06 56.6 67 41.8
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.9e-06 56.6 70 41.4
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 1.9e-06 56.6 89 37.1
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 2.4e-06 56.2 96 37.5
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 2.4e-06 56.2 63 44.4
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 3.2e-06 55.8 58 46.6
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 3.2e-06 55.8 68 39.7
Hund02862 Selenicereus undatus HOM05D002989 ORTHO05D003218 4.2e-06 55.5 53 52.8
VMungo0720G0840 Vigna mungo HOM05D002989 ORTHO05D003218 4.2e-06 55.5 64 43.8
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 5.5e-06 55.1 96 33.3
Cc01_g19040 Coffea canephora HOM05D002989 ORTHO05D003218 5.5e-06 55.1 66 47.0
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 5.5e-06 55.1 63 44.4
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 5.5e-06 55.1 64 42.2
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 7.1e-06 54.7 90 36.7
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 7.1e-06 54.7 67 40.3
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 7.1e-06 54.7 78 39.7
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 7.1e-06 54.7 66 42.4
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 9.3e-06 54.3 64 40.6
HanXRQChr11g0338821 Helianthus annuus HOM05D002989 ORTHO05D003218 9.3e-06 54.3 75 37.3


User provided reference genes

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